HsaINT0076829 @ hg38
Intron Retention
Gene
ENSG00000180448 | ARHGAP45
Description
Rho GTPase activating protein 45 [Source:HGNC Symbol;Acc:HGNC:17102]
Coordinates
chr19:1080255-1080547:+
Coord C1 exon
chr19:1080255-1080379
Coord A exon
chr19:1080380-1080463
Coord C2 exon
chr19:1080464-1080547
Length
84 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
AGAGACGCCTCTTTCTCCAGCCG
3' ss Score
4.08
Exon sequences
Seq C1 exon
GTCCCCCGTCATGCGTGCCCGGAAGAGCAGCTTCAACGTGAGTGATGTGGCGCGGCCGGAGGCTGCCGGGAGCCCCCCAGAAGAAGGCGGGTGCACTGAGGGCACACCTGCCAAGGACCACAGGG
Seq A exon
GTGAGTGTCCGGCGGGGCCCAGGGGCGGACGCTGGCTCCCTGCGACCCACCCTGGCCCTTCACCAGAGACGCCTCTTTCTCCAG
Seq C2 exon
CCGGGCGAGGACACCAGGTTCACAAGTCATGGCCGCTCTCGATCTCAGACTCGGACAGTGGGCTGGACCCCGGCCCTGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180448:ENST00000539243:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCAGCTTCAACGTGAGT
R:
AGCCCACTGTCCGAGTCTG
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development