RnoINT0020258 @ rn6
Intron Retention
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12731797-12732093:-
Coord C1 exon
chr7:12731969-12732093
Coord A exon
chr7:12731875-12731968
Coord C2 exon
chr7:12731797-12731874
Length
94 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
3' ss Seq
TTATCTCTCTCATCCTGCAGGGG
3' ss Score
11.68
Exon sequences
Seq C1 exon
GTCCCCAATCATGCGAACACGGAAGGGCAGCTTCAATCCTGGTGACGCTTCAGGACCCGAAGCTGCCGGCAGTCCCCCGGAGGAAGGTGGCACGTCTGAGGGGGCTCCCAACAAGGACCACAGGG
Seq A exon
GTGAGCGTGTGCAAGCACACAACAGATGCTGCATTCTGACAGCCCCTGCTTCCCGCTGTGGGGACACGCTTTCTTTATCTCTCTCATCCTGCAG
Seq C2 exon
GGGGACGAGGTCATCAGGTACATAAGTCCTGGCCTATCTCCATCTCAGACACCGAAGTCAGCCTGGACGTCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220:ENSRNOT00000060648:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=NA C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATGCGAACACGGAAGGG
R:
GGCTGACTTCGGTGTCTGAGA
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]