HsaINT0076836 @ hg38
Intron Retention
Gene
ENSG00000180448 | ARHGAP45
Description
Rho GTPase activating protein 45 [Source:HGNC Symbol;Acc:HGNC:17102]
Coordinates
chr19:1082840-1083353:+
Coord C1 exon
chr19:1082840-1083066
Coord A exon
chr19:1083067-1083142
Coord C2 exon
chr19:1083143-1083353
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGCCCCTGCCCACCCCGCAGGAT
3' ss Score
8.16
Exon sequences
Seq C1 exon
CTTCCCGAGCCGCTCATCTCCTTCCGCCTCTACCACGAGCTCGTAGGGCTGGCCAAGGACAGCCTGAAGGCAGAGGCCGAGGCCAAGGCGGCGTCCCGGGGCCGGCAGGACGGCTCGGAGAGCGAGGCAGTGGCGGTGGCCCTGGCAGGTCGGCTGCGGGAGCTCCTGCGGGACCTGCCGCCTGAGAACCGGGCCTCGCTGCAGTACCTGCTGCGTCACCTACGCAG
Seq A exon
GTGAGTCCCGGCATATGGAGTGGAGGGCGCGGGGTCCCGGGAGCCGCTCAGCACCTGGCCCCTGCCCACCCCGCAG
Seq C2 exon
GATCGTGGAGGTGGAGCAGGACAACAAGATGACCCCCGGGAACCTGGGCATCGTGTTCGGGCCCACGCTGCTTCGGCCACGGCCCACCGAGGCCACCGTGTCCCTCTCCTCCCTGGTGGATTATCCCCATCAGGCCCGCGTCATCGAGACTCTCATCGTCCACTACGGCCTGGTCTTCGAGGAGGAGCCGGAGGAGACCCCCGGGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180448:ENST00000539243:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(43.4=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(18.5=45.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACCTGCTGCGTCACCTA
R:
GATGACGCGGGCCTGATG
Band lengths:
171-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development