MmuINT0078340 @ mm10
Intron Retention
Gene
ENSMUSG00000035697 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:MGI Symbol;Acc:MGI:1917969]
Coordinates
chr10:80028657-80029183:+
Coord C1 exon
chr10:80028657-80028883
Coord A exon
chr10:80028884-80028972
Coord C2 exon
chr10:80028973-80029183
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCAACTCTGCCCCTCCCCAGGAT
3' ss Score
8.57
Exon sequences
Seq C1 exon
CTACCGGAGCCCCTTATCTCTTTTCGCTTCTACCATGAGCTGGTGGGACTAGCTAAGGACAGCCTAAAGGCCGAAGCCGAAGCTAAGGCAGCGAGCCGGGGTCGGCAGGGTGGGTCCGAGAGTGAGGCTGCAACCTTGGCTATGGTGGGCCGCCTGCGTGAGCTCATGCAGGATCTGCCAGCCGAAAACCGGGCCACACTCTTATACCTGCTGAAGCACTTGCGAAG
Seq A exon
GTGAGGGTCCCTGTGTGGTGCAAGAGCTGACTGGGGGTGGGGGTGTCCCGGAGCCACACCCACCTACACCCAACTCTGCCCCTCCCCAG
Seq C2 exon
GATCGTGGAAATGGAGCAGGATAACAAGATGACCCCTGGGAACCTGGGCATCGTTTTCGGGCCCACACTGTTGCGGCCTCGACCCACTGACGCCACCGTGTCCCTCTCTTCTCTGGTGGATTATCCCCACCAGGCCCGAGTTATTGAGACTCTGATTGTCCACTACGGCCTGGTCTTTGAGGAGGAGCCAGAGGAGGCGCCTGGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035697:ENSMUST00000099501:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.310
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(43.4=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(18.5=45.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATCTGCCAGCCGAAAAC
R:
AGAGAAGAGAGGGACACGGTG
Band lengths:
173-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types