RnoINT0020265 @ rn6
Intron Retention
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12729064-12729582:-
Coord C1 exon
chr7:12729356-12729582
Coord A exon
chr7:12729275-12729355
Coord C2 exon
chr7:12729064-12729274
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCATCTCTGCCCCTCCCTAGGAT
3' ss Score
10.72
Exon sequences
Seq C1 exon
CTGCCGGAGCCCCTCATCTCTTTTCGCTTCTACCATGAGCTGGTGGGATTAGCTAAGGACAGCCTAAAGGCAGAGGCCGAAGCCAAGGCAGCAAGCCGGGGCCGGCAGGACGGGTCCGAGAGTGAGGCTGCGACCTTGGCCATGGTGGGCCGCCTGCGAGAGCTCATGCGGGACCTGCCAGCCGAAAACCGGGCCACACTCTTATACCTGCTGAGGCACCTGCGAAG
Seq A exon
GTGAGGGCCCCTGAGCGGTGCAAGAGCTGACTGGGGACCCCTGGAGCCACACCCACCCACACCATCTCTGCCCCTCCCTAG
Seq C2 exon
GATCGTGGAAATGGAGCAAGATAACAAGATGACCCCCGGGAACCTGGGCATCGTTTTCGGGCCCACACTGCTGCGGCCTCGGCCCACAGACGCCACCGTGTCCCTCTCTTCTCTGGTGGACTACCCCCACCAGGCCCGTGTCATTGAGACTCTGATTGTCCACTATGGCCTGGTCTTTGAGGAGGAGCCAGAAGAAGCAGCTGGCAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220:ENSRNOT00000060648:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.225
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(43.4=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(18.5=45.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATACCTGCTGAGGCACCTGC
R:
GTCTCAATGACACGGGCCTG
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]