HsaINT0082136 @ hg19
Intron Retention
Gene
ENSG00000143319 | ISG20L2
Description
interferon stimulated exonuclease gene 20kDa-like 2 [Source:HGNC Symbol;Acc:25745]
Coordinates
chr1:156693940-156697705:-
Coord C1 exon
chr1:156696698-156697705
Coord A exon
chr1:156694141-156696697
Coord C2 exon
chr1:156693940-156694140
Length
2557 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTTCCCACACTTCTTCCAGATC
3' ss Score
9.75
Exon sequences
Seq C1 exon
TCATTTCATGTTATGTTTTCATTTCCCCTCTGTCTGAGAGATTGCTCTGATGTCTTTCCTTCCATAAGTCCTACGGAGATCGAGCTTACCTCATTTTTCTCCCAGGCCTAGGAGCTCAATTACCAGGATCACTTTCTTCCCCAGGGTGTACTACAGACCTCCACATGTTGGACAGTAGGATTCAGCAGAGAATGAGTCCCACATCCTCTTTTCATCCATAAGCCACTCTTCCCAACTACTCTTCCGCCTTCCATTGTCCCTATGTCTACTTTACTGCTCAATCTGGATTTTGGGGAACCTCCTCCCAAAAAGGCATTAGAAGGAAATGCCAAGCACCGAAATTTTGTCAAGAAGCGGAGGCTCTTAGAACGGAGAGGCTTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGCGCCTAAGTTGCACTCTGAACCTTCAAAGAAAGGGGAAACTCCTACGGTCGATGGCACTTGGAAGACCCCTTCCTTCCCAAAAAAGAAGACAGCTGCTTCCAGCAATGGGTCAGGACAGCCCCTGGACAAGAAAGCTGCAGTGTCTTGGTTGACCCCTGCCCCTTCAAAAAAGGCTGATTCTGTTGCTGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGTGCCCTTCCAAAGATCAATAGCCACCCAACCCGCTCTCAGAAGAAGAGCTCCCAGAAGAAATCCTCTAAAAAGAACCATCCTCAGAAGAATGCCCCACAGAACTCCACCCAAGCTCATTCAGAGAATAAATGCTCCGGAGCATCCCAGAAGTTGCCACGGAAGATGGTGGCAATTGACTGTGAGATGGTGGGCACAGGACCAAAGGGGCATGTTAGTTCCTTGGCTCGATGTAGCATTGTCAACTACAACGGAGATGTGCTTTATGACGAGTACATTCTTCCCCCCTGCCACATTGTGGACTACCGAACCAGGTGGAGTGGTATCCGGAAGCAGCACATGGTGAATGCCACACCCTTCAAGATTGCTCGAGGCCAG
Seq A exon
GTAAGAAGCATGGGGCTTGATGGTGGCAGGGAGGTGGATGGAGAGAGGTCTAAATCATTTTTCAGCAAAGGATATCACTATGGGAAGACACCAACGTTTGTGGAGGGAGGGAGGAGAATCTATCAGTTGTTGAAGAAGGCCCCCTGTCGGTGGAAGAAGCAGTGAAAGTCAGGAAGGTACAATTAGCTGGTGTCACAAACTTCATTGGTCAAGATCTATTTTAGCCGGGCGCAGTGGCACTTGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCGGGAGAATCGCTCAAGCCCAGGAACTCAAGCCCTGTCTGGGCAACATAGCGGAACTCATCTACAAAAAAGTTAGCCAAGTGTGGTACATGCCTGTAGTCCCAGCTACTCAGGAGGTCGAGGCTGCAGTGAGCTGAGATCACACCACTGCCACTGCACTCCAGCCTGAGCGACAGAGTGAGATCCTGTCTCAAAAAAACAAACAAAAAAACTATTTTAGGTTCTAAATTGGGTCTGGGGAACTGGGAATCTGCATAGAAAAATAACAGCAAGTGATGAAACTAGACAGAGCTGCAGACACCAGTGTCAGGAGAAAGGGCTTGATTTGGAAAAACCTTGCGAGTTGGAGCCTAAGCTTGAGAGAGGAAAGGTGGAGAGCTCGTCCCAAGCAAAAAGTAGCCTGGGGCAAGTGCGGAAAGTGGTGGTGGTAAGAGAGGGCAGAAAGTTGACAGGAGGAGCTGGGGTATATATTGTCCAACTGGAACAGGTAACCAGTGAACGGCATAAACGGCACAGGGCCGGCACTTCGGGTTGTCATCTCACTCCTAGCCCTGTGCTGGCCATGGAGCGCAAGGCATGAACGGAAAGGAGAGTGAGCTGGGAGGGGTGAAAGAGGAAGTGAAGGGAGAGCAAGAGACCTGCTGGTCTCAGGAGGCCGCCAGAGGGCGCCCTTGGTCCACGTCTTTGCAGTTTCAGGTCCACACTCTGCCCTCTCTGGACACGCTGTTCCCATAATGCCTTATATGCGGTCAGTTGGAGGAGGTTCGTTAGAGGTGAGGTGACTGACTATTTTAGAAAAGACGGAAAGAAGAGTTAAACATCTTGTGCACAAAGGGGCGCAGCCAAGCAAAGGCATAGGAGAGGCAGAAGATGGGACGGGTCTGAGACAGCAAATCTGCCCAGCTTTGATGAGGGCTATATGTCGAGGTTAATAAGAAGTGAAGGTGGTGGTGGACAGTAAGTAGGTGAAGTCAGGAGTAACGAAATATCTAGTTCACGGGACTACGTCTGGTTTTCATCATAAAGCACTTCCCCAGTGCCAAGCTGGGGTTATGAGACTAAGGTATGTCCAGATGAGCCTAGCCCCTTCAGAGGGGGTCCCTTTGGGAGGCTATGCAGGACTGTCACTTTTGTTGAAAACCTGTTTGGAACCTCATTTGGGAATGGCCTTCAGAGCCTGTGGTGTGTTCTTCGGTTGTCCTCATTGGTAGCATGTCCTCCTACTTCAAGAGCCTGAAATGGCTAGGTGTGGTGACATGTGTCTGTAATCCCAGCTACTCAGGAGTTTGAGGTGAGAGCATTGCTTGAGCCCAGGAGTTTGAGGCCAGCCAACCTGGGAAAAATAGCAAGACCTCATCTCTTTTAAAAAATAAGTTACCTGAAGGCCAGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGCCTGAAGCGGGCAGATCACAAGATCAGGAGTTCAAGACCAGCCTGGCCCATATGGTGAAACTCCGTCTCTACTAAAAATACAAAACTTAGCCAGGCATGGTGGCAGGTGCCAGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAACGCTTGAACCCGGGAGGCGGAGGTTGTAGTGAGCCAAGATCGCGCCAGTACACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAAAAAAAAAAAACAGTTTCCTGAAATATTGAGAAGTTATTTTTATTTTACTTGGTTCCAAAACTAGTGTGAATAAGGTTGCTTCTGCAACTTTAGTTTATATGTGATTCTTAATTTTTTACGGTTTGTAGACTCTGAGAATTTGATGAAAGCCACAGATTCTCTTCCTCTAGTACCCATACACATCTAATTGCATGTAATTTTGGGCTTTTGTTAGCCTCCCTGGAGCCCGGGTCCCAGCCATGTGTCTAAGGCCAACATAATGGTAATAGTTAAAGGACTTCATGTAGCAAGCCAGAACTGAACTAAATACATGGACATCTCAAACATGAGTGTCATTTAGGACTGAAGGCAAATTAATGTCATGGGGTGGAGATCAATAAGAAGGTAAGGAGCCACTGGCAGTATGAGTCCAAACAGGGTATACCATGGAAATCACCTGTGGAAGAGGAAGGTGGATTCCAGAAGAAAGAAAACTTGTGGGAGTGAGCATTTCAAGGATGGAGAGGTAGGCAGTTGGTGAAAGAATCCAGAAGGGATTGATGGTCATGTTGGGCTTTCAGAATGCAGGGGTTCCACTTCAGTCTTCCTTCTCACCACTCTCTTCCCACACTTCTTCCAG
Seq C2 exon
ATCTTGAAGATACTCACAGGGAAGATAGTGGTGGGGCATGCCATCCACAACGACTTCAAAGCCCTTCAGTACTTTCACCCCAAGTCCCTCACCCGTGACACCTCCCATATCCCCCCCCTCAACCGGAAGGCTGACTGCCCGGAGAATGCCACCATGTCTCTGAAGCATCTCACCAAGAAGCTGCTAAACCGGGATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143319-ISG20L2:NM_030980:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.651 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0118215=Glucosamine_iso=WD(100=40.2),PF0092919=RNase_T=PU(44.2=27.7)
A:
NA
C2:
PF0092919=RNase_T=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)