GgaINT0140201 @ galGal3
Intron Retention
Gene
ENSGALG00000024167 | ISG20L2
Description
NA
Coordinates
chr25:863078-863888:+
Coord C1 exon
chr25:863078-863346
Coord A exon
chr25:863347-863687
Coord C2 exon
chr25:863688-863888
Length
341 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGA
5' ss Score
3.51
3' ss Seq
CTCCCTCCTTTCCTCCCCAGATC
3' ss Score
13.11
Exon sequences
Seq C1 exon
AAAAGCCGCTAAGGGCCCCGGTGCGAGCCACCGGGTTGCCCCCACCGCCCAGCAAGCTCGTTGCTATCGACTGTGAGATGGTGGGCACCGGGCCCGGCGGGTGCACCAGCTCCTTGGCCCGCTGTAGCATTGTGGGCTATGAGGGCGACGTGCTGTATGACTCCTACGTGCGGCCCACGGAGCCCATCGTGGACTACCGCACCCGCTGGAGCGGCATCCGCAAGAAGCACATGGTCAACGCTGTCCCTTTCTGCAAGGCCCAGCGGGAG
Seq A exon
GTGTGATGTTGGGGGTGGTGTGGCCATGGGGCAGGGAAGGGGGACTGTGTTCCTGGTGGGCTTTGAGGGCTGTCTGTGGTGGTTGGGGGCTGCTGAGGATATGGCATCTTGGTGGGGACTGCCCACGTCCCAGTCCCCATCCTGCGGCAGAGGGGACGTCATCCCATGCCTCTGCTGCTCCCATTCTGTCCTACATCGTAGCCCTAAGCTGTGATTCCCACTGGTAGCGGGGTAGATCCATGCTACTGGGCATGAGCACCACTCTGCTGTGGGGCAGGACCCTCCAGTGTGCAGCATGGTGCACTGGGGCCTGCTCTAATGCTCCCTCCTTTCCTCCCCAG
Seq C2 exon
ATCCTGAAGATCCTCTCTGGAAAGGTGGTGGTTGGCCATGCCGTACACAACGACTTCAAGGCTCTCAAGTACTCCCACCCCAAAGAACTCACCCGTGACACATCCAAAATCCCCTTGTTGAATCAAAAGGGTGGGTTCCCCGAGAATGTCGCCATCTCCCTGAAGCGCCTCGCCAAGGAACTGCTGCACAAAGATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024167:ENSGALT00000040831:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=76.7)
A:
NA
C2:
PF0092919=RNase_T=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTAGCATTGTGGGCTAT
R:
CTTTGTGCAGCAGTTCCTTGG
Band lengths:
343-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]