MmuINT0083412 @ mm9
Intron Retention
Gene
ENSMUSG00000048039 | Isg20l2
Description
interferon stimulated exonuclease gene 20-like 2 [Source:MGI Symbol;Acc:MGI:2140076]
Coordinates
chr3:87735253-87742696:+
Coord C1 exon
chr3:87735253-87736197
Coord A exon
chr3:87736198-87742495
Coord C2 exon
chr3:87742496-87742696
Length
6298 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTTATGTGCCCATTCTAGATC
3' ss Score
9.66
Exon sequences
Seq C1 exon
GCCTATGGTGCGGGAATCAGGATTACTTTGTCCCCAAGGCTGATTGCAGACCTCCACATGTTGAACTATGGGATTCCACAGAGGATGAGCCTCTCATCCTTTTGCTATCAGTGAGCCATTCTTCCCAGCTTCCTCCCACCATCCACTGATCTCATGTCTACCATACTCCTGAATTTAGACTTTGGGCAACCTTCGAAAAAGGCATTTGGAGGAAATGCCAAACATCAACGCTTTGTCAAGAAGCGAAGGTTCTTGGAACAGAAAGGATTTCTGAATAAAAAGAACCAACCCCCTAACAAGGTGTCTAAGTTGAACTCAGAACCTCCAAAGAAAGGGGAAACTTCAAGAGTAGATGGCATTTTGAAGATCCTTCCATGCCCAAAGAAGAAAGAGGCAGCTGCCTCCAAGAGGGACTCAGAGCAGTCCAAAGACAAGAAAGCACCATTGTCTTGGCTGACCCCTGCTCCTTCAAAGAAGACTGCTTCTGTTGTGTCTAAAATAGATTTGCTAGGGGAGTTTCAGAGTGCCCTTCCAAAGACTAAGAGCACCCAGAAGAAGGGCTCCAAGAAGAAGTCCTTGAAAAAGAAAATTGCTACAGAGAACTCCACCCAAGCTCAGTCAAAGGATAAAGGCTCCAAGAAGAAGCCCTTGAAGAAAAATGCTGTACCGAACTCCACCCAAGCTCGTTCTGAAGATAAGTGCCCTACAGTCCCCCAAAACTTGCCAGGGAAGATGGTGGCAATAGACTGTGAAATGGTGGGCACAGGACCCAAGGGACGCGTTAGTTCCCTGGCTCGATGCAGCATTGTAAATTACAATGGTGATGTGCTGTACGATGAGTACGTCCTCCCCCCCTGCTACATCGTCAACTACCGGACCAGATGGAGTGGCATCCGGAAGTGCCACATGGTTAACGCTACACCCTTTAAGACTGCTCGGAGTCAG
Seq A exon
GTGAGGAGCGTGGGTCGAGACAGTAGAGAGAGGTCTGGAGAGGACTTTCAGCAAGTGATATTCTGGGGAGGTGTCAAAGGATGGTAAAGGGAGGGAGAATAATGTCACGTGATTAGGAAGGCTTCCTATTGGAGTAAGGATTAGTTTCTTTTTTACATGGATCCTACCACCTCAGTTGACCCAATCTGAAAGCTCACAGACATGCTCAACTTTGCCTTCTAGTATAATTCTATTAAGTAGACAGTTGTGTCACAAGTCCATCCCTGTCAACTTATGACCAAACATCATACTTTTTAGCCAAACTTTCCATCCTTGGTCCTCATAAGCTCATAGTTATCCTATAATACAAATTTATGGACTGGATTTAGTTCAATTTCAAACGTTTCGAACAGTCTAAACAGAGTCTCTGAAGCTTAGGCAGACTCTTACCTGTGAGCCCCAGCACATCAGAAAACAAAACAAAGGCTGAGTGTGGTGGAGCACACCTTTTTTTTTTTTTTTGAGACAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCTACCACTGCCCAGCGGAGCACAGTTTTAAAGCCAGTACTTGGGAGGTAGAGATGGGTGGATCTCTGTGAGTTCCAGGTCAGTTTCGAGTTACAAGGTGAGATCCTGTCTCAAAACCAAGTTTACACAAAAAGTGCGTGCTACACGAGCATAACAACTGAATCCGGAATCCGTAGAGCCCAGCTGTCTTAGTCAGGGTTTCTTTTTTTTTTTTAAATAATCTTTTTTTTTTAGATTTATTTATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCTGAAGAGGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGTAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTTAGTCAGGGTTTCTATTGCTATGATAAAACACCACGACCAAAAGCAGCCTTAAGAGGGAAGGAAGGGTTTATTTCAGTAATAGTCCAGCATGAGGGAAGTTAGAGTGGGCACTCAAGGCCGGAACTCCATGGCTGAAGCCATGAAGGAATGCTGCTGCTGGTTTGCTCCCTCCTGGCTTGTTCGGCCTGCTTTCTTGAAATACCTGTCTGGGGATGGCAGCACTTGCTTCAGTCACCATAAAGAGAAGGCAGCACAGACTTGTCTACAGACAAGTGGAGACATTTTCTCAAATAAGGTTCTCTCTTCTCAGGTAAATGTCTCAAGATGACTAAGTAGTTGACCCTGGTCACCTTAACAAACATATCATTGTTAAATCAACCTTTCCTTTCTTGTTGTCCCCAAGATGTCATAGTAATATCAATATTACAATATAAAACTTACTCCAAACTTTAATAAAAGTCCCATAGTCTTTAAAAGTTCAAACACTTAAAAAGTTTAAAGTCTTAAATATCTAAAGTCTTTAGAATTCCTGATTTCTTTAAGGTCTTATAACTATGGGTTCTTGGAAAATCAAAAACAGGTTAAGTATTTTATTTCAAGAGAAAAGAGCCAGGATAGATACAGTCACAGTCAAAGGAAAAGAAAGTCCAACATTACACAGCTTAAGCGTCCTGTTCAGAGACTCACGATCTCGTAGGCTGGCCATGAACTCGGAGACAGTCTTGCCCCTGCTTCTCAAATGCTGAGAAGGAAGGTATGCGCTGCTATGCCTGCCCTTAATAGAATCTTTAAGGAACTTTCAACCTTCTCTCTGAAACTTTACAAGCCAGGCCTTCATCCTCTGCACTGCTCTCAGCATTATTCTTCCTCTAAGTTTGCACAACAGCTCGTTAAGCTTTGAACACTAGGTGGTTTTCCAGTGCCAACTTCCAAAGTCCTTTTTCAATCCTCCCCAAAACACATGGTTAGTGTTACATCAGCAATACCCGACAACCTAGAACCAGTTTCTTTCTCTCTCTCTTTTTTTTTTCCTTTTCGGTTTTATTGAGACAGGGCTTCTTTGTATAGTCCTGGCTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAGGTGCTGAGATTAAAGGTGTGCACCACCACTGTCTGGCTTCTCTTAGAGGTTCTATTGCTGTGATAAAAACACTTTGACTAAAAGCAACTTGGGGAGGGAAGGGTTTATTTTAGCTTACAATTGTAGTCCAAGAAGAAATCAGAGCAGGATTCAAGGCAGAAACCTGGAGGCAGGAACTGAAGACGAGGCCATGGAATTGCTCGCTGCCTTGCTCCTCCCTCCAGGCTTGCTTAGAGCATCCAGGACCGTAAGCCTTGTGGCATTTGGAGGAAATGCATGGCATAGCTGGAAAAGACAACGGGGCAAACACCAGAGCCTCCAGTTCCATGTCCAGCACTCTGCACTGGTCATCACATTATCTGGACTGCCAGGCTATAGGCTGTAGGCTGGCCCTTGCAGCTCTCCTGCCTGTAGCACACAGAGCCCCTCTGTTGGGCTAGCTTCACTTTGTGCCTGTAGTGTACTTGACAAGTACACTGTGGTCCTGGCATTTCCAAAGCCCCAGATCCTCCATTGTAACTTAGGTTTCACCTTTACAGCTTTGTGCAGGAGCCTCCTTGAAAGGGCACCACTCCTGTCTGTCACACATGACCTCCCCTTAAATGGCCTTCATGCAAGCCCCCATTACCCCCTTATTTTTTGCATTTTTTTAATGCCCTAAAAATCAGTGCCACGTGTTGCAGAAAAGTTTTGCTTCCAGTTCAAAATGTAGTCTGGGCCCCTAAAACTAAAGTTGTGGGGACATCTGTTTGCTTTGAATAAATTTTTTTTTTGAGACTTTTAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATTCGCCTGCCTCTGCCTCCAAGTGCTAGGATTAAAGGTGTGTGCCACCACACCCGGCACTCTGATTAAATATTAATTAAGAACTTTCCTAAGTGCTGATTCGGCTTTCTCCATTTAAATGAAGTGATTTTTCCTCCCCTGTGGGCAGAGTCTTGCCCTTTATGCACTTTACCCCTTGTCCCAGTGGCGGCATCACTTTTCATAGCCTGTAACTTTGAGTGTATGGTATATGGTCTTTTCCCCAGCAAACTGTTCTCCCCCCCCCCCCACTAGTTTACTATCCTACTTGCTCTCTCACTGTAGATGTGGATAAGAACAGGGAGCAGTCGCCTTTACATAGCCTTGAACAGTACCCCGTGTAGAAGTATCTTCTGCCAAACAGTCCATTATTTTTTAATTCAGCCTCATTCAAGTTCTCTGGGCTCTGATGAGCCAGGCCTTCATTGTTGCATTTCTCTTGGCGTTATCCTCTTTCAGAATTCCCCCAGAATAGCCCATTGAGCCCTGTATGCAGCATTCTAGTTCTTCTTCTCTAATCCACCTCTCTAAACTCCTACATTCCCTCCCCAAAACCAGTTCCAAAGGTAGAGAACCTGCTGGTGCTGGGTGGCCACCAGAGGGCACCATTGCTCTGCTTTGCAATTGGGGAATTTGCTTTCTCTAGACACACTTCAGGAATTCTTTTTCTTGGACAGGGCTTCATGTAGCCTAGGCTGGCTCAAGCTGGCTTTGAATTTGTAGCTAAGGATTATTTTGGTCCTCTGATTCTCTTGTACCTATCTCCTGAGTGCTATGATTATAGGCATGTGCCACCACACATGGTTTGCACAGATACAACCCAAGGCCGTATCATGACAGGCAAGCGCTATGCCAGCTGAGCCACATCCCCAGCTCCTCCAATGATTCTTTTAATGCCAGACAGTCCACTGAAGGAAGTTTATAAGAGATGAAGTAGCTAGGGGTTTTTAAAAAGGCAGGAAGTACCAGGCATGTTGGTGCACACCTTTAATCCCAGCACTGAGGAGGCAGGGGCAGGTGGAGCTTTAAACTTGAAGCGAGCCAGGACTACACAGTGGGGTTTCTCAAAAACAAAAGGAAAGAGATGCCAGGGCACAGTTGCGTAGACGTGTAGGAGAGGGCCCAGCTTCAGTGAGGGCAGCTAAGGGCCAGACAAGATGAAGCGCGTGCTGGGGGAGACTGAGCAGAGCACAGAGCAGATGCTTGTTGGTTGAACCTACCCGGGCAAAGACACACTGTGTGGTGTTCATCACCAAGAATTTCACCTTGATTAAGCTGGGGTTATGAATCTGAGATGAGCCCAGATGCCTTACTAAGTGGGTCCCCTGAAAACTGCAGGACTGCTGCTGCTTTCACAGTACCGTTTTGAGTATGGCCTGCAGAACCTGTAAGATTTTAAATGCTGAGACTTTAGTTGGTTTCAAGAAAAGTATCCAGAAAACCCCATCTACAGCTTTACTCTTTTTTTTTTTTTCCAAGACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTAAACTCAGAAATCCGCCTGCCCCTGCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCAGCTTTTTTTTTTTTATTTATATGAGTACGCCGTAGCCGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTCTGAACCACTGAGCCATCTCTCCAGCCCCAGCTTTACTCTTTCAATGGCTATTGTTTGTTTGCTTTCTTAGCTTTTTTTCTCTCTCATTTTGTGAAGATGGAGTGTGTCATGACATGAGTGCAGAGGTTAGAGGGTGACTTGTGGTGGCTGGTTCTCTCATGTGGGTCTCAGGGATCATCGCAGATCATCAAACGTGGTGACAAGAATTTTTATCTTCGCCAGGCAGTGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTAGTTCGAGGCCAGCCTGGTCTATAAAGTGAGTTCCAGGACAGTCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAAAAGACTCTTTATTTTCGGGGTCCATCTTACTGGCCTACCACCTTGGAGCAGGTGCTCATATATCCCAGGCTAGCCTCATGTATCTCAGTCTAGTCTCAGACCTTCTGTGGAGCCAAAAATGACTTTTAACTTCAGTTCTTCCTACTGTGACCTCCCAAGTATAGGGATTACAGGCCTGTGCCAATGTGCACAGTTATTGTGGTGCTGGAACCCAGGGTTTTACACATGCTAGGCAAGCACTCTGAGCCACATTCCCAGATTTAAACCCCCCACCACCTTTTTTTTTTTAATTTGTTTTTTTAAGATTTATTTGCCGGAAGAGGGCATGAGATCCCATTACAGATGGTTGTGAGCCACTGTGTGGTTGCTGGCGATTGAACTCATCACCTCTGGAATAGCAGACAGTGCTCTTAATTGCTGAGCCATCTCTACAGCCCCGCCAACCCTGTTTTTTTCGAGAAGTCTCTTGTAGCTCAGCCCATTCATTCTGTAACTTTCAGTCTGCCTGCCTCAGCTGTCTTTGTGCTGGAATTGTAGGATTATATAACCTTGCATAGTGATTAATTTTTTTTAAAGGATTTATCTTTAGTTGTGTGTATATGTGGTTTTACATGTGTGTGCAGTGCCTTCGGAGACCCAACGAGGATGTCAGGTCCTCTCAAACTGTGGTCACAGGCAGTTTTGAGTTACTCTACATAAGTGCCAGGAACTGAACTCTAGTCCTCTTGTAGAGTACACACTTTAACTTCAGCCCCATGATCAGCATCTTTATGTCCCATTGGAGACTGAAGGAAGCAGCTAGGGATAATGGTCAGTGGTAGAGCATTTACTTGGCATATACAAGGCCTCAGGTTCTTCGGGGATGGGAGAATGCTGATAACCATTGTTGGGATGGAAGTTACTAAACATGTAAGGGACCTCTGGTGATGTAGATCCAAACAGGATTGCATAGCAGTTCTCTAGGGAAGGGAGAGCTGGAGTTCTGAAGGAGGAACAGTTGTGGAAGGGGGCATTTCAAGAATGGGGTGAGGGTGGAGGTGATGGGGTGGTATGTTGGTGATGGCCATATTGGGCCTTCACAATCTAAGGAGCTCCACCTTTGAGTATGGCTTCTCATTACCTCCTTATGTGCCCATTCTAG
Seq C2 exon
ATCTTGAAGATACTCTCAGGGAAGGTAGTGATAGGGCATGCCATTCACAATGACTACAAAGCCCTACAGTACTTTCATCCCAAGTCCCTCACCAGAGACACTTCCCGGATACCACTCCTCAACCGGAAGGCTGACTGCCCAGAAAATGTCACTTTGTCACTGAAGCATCTCACCAAGAAGCTCCTGAGTCGGGACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048039-Isg20l2:NM_177663:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=26.1)
A:
NA
C2:
PF0092919=RNase_T=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: