RnoINT0075726 @ rn6
Intron Retention
Gene
ENSRNOG00000011402 | Isg20l2
Description
interferon stimulated exonuclease gene 20-like 2 [Source:RGD Symbol;Acc:1359413]
Coordinates
chr2:187303169-187310984:+
Coord C1 exon
chr2:187303169-187304117
Coord A exon
chr2:187304118-187310783
Coord C2 exon
chr2:187310784-187310984
Length
6666 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCATTATGTGCCCATTCCAGATC
3' ss Score
9.18
Exon sequences
Seq C1 exon
GCCTATGGTGCAAGTATCAGGATTACTTTTGCCCCCAAGGCTAATTGCAGATCTCCTCATGTTGAACTATGGGATTCCACAGAGAATGAGACTCTCATCCTTTTTCCATCAGTGAGCCACTCTTCCCAGCTTTCTCCCACCATCCACTGACCTCATGTCTACCATACTCCTGAATTTGGACTTTGGGGAACCTTCGAAAAAGGCATTTGGAGGAAATGCCAAACATCAACGTTTTGTCAAGAAGCGAAGGTTCTTGGAACAGAAAGGATTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGTGTCTAAATTAAACTCAGAACCTCCAAAGAAAGGGGAAACTTCAAGAGTAGATAGCATTTCGAAGATCCTTTCATGCCTAAAGAAGAAGAAAGAGGCAGCTGCCTCCAAGAGGGACTCAGAACAGTCCAAAGACAAGAAAGCATCATTGTCATGGCTGACCCCTGCTCCTTCAAAGAAGACTGATTCTGTTGTGGCTAAAATAGATTTGCTTGGGGAGTTTCAGAGTGCCCTTCCAAAGCCTAAGAGACGCACCCAGAAGAAGGGCTCTAAGAAGCCCTTGAAAAAGAAAATTGCTACAGAAAACTCCACCCAAACTCAGTCAAAGGATAAAGGCTCCAACAAGAAGCCCTTGAAGAAAAATGCTGTACAGAACTCCACCCAAGCTCAACCAGAGGATAAGTGCCCTAAAGTCCCTCAAAGCTTGCCAAGGAAGATGGTGGCAATAGACTGTGAAATGGTGGGCACGGGACCCAAGGGGCGTGTGAGTTCCTTGGCTCGCTGCAGCATCGTGAATTACAATGGAGATGTGCTTTATGATGAGTACATCCGCCCCCCCTGCTATATCGTGGACTACCGGACCAGGTGGAGTGGCATCCGGAAGTGCCACATGGTTAATGCTACCCCCTTTAAGACTGCTCGGAGTCAG
Seq A exon
GTGAGGAGCATGGGACAAGACGGAGAGAGGTCCAGAGAGGACTTTGAATAAGTAATATTCTGGGGAGGCGTCAAAGGATGGTAAAGGGAGGGAGAATAATGTCACATGATCAAGAAGGCTTCCTGTTGGAGTAAGGAATTGTTTTTGTGGATGCCATGACAAAATACTCAGCAAAGGAATTGAATGGATTTATTTGGGCTCGGAGTTTAAGGATTTTTTTCCATCACAATGCAGACATTGTGGCAACAAGAGCAGGATGTAGCTACTGAGGAGTCAGGAAGCAGAGAGAAGTAAATACTGACTCCTGTTCTTTTTTTATTCAGCCTAGGACTCCGGCCAATGGAATGAATAGGTTATTTTGTTTTGTTTTAGTTTTTTTACACGGCTCTTCCCACTTCAGCTAATGCAATCCAAAGCTCACAGACATGCTCAAATTTGTCTTCTAGATAATTCTGTCAAGTAGACAGTACTATCACAAGTCCACCCCTGTCAACTTATGACTAAACATGATACTTTTAGCCAAACCTTCCATCCTTGGTCCTCATAAGCTCATAGCCATCCAGAAATACAAACTGGATTTAGTTCAATTGCAAAAGTTTTCATAGTTTCTAACAGTCTAAACTGAGTCTCTGAAACTTAGGCAGACTCTTAACTGAGAGCGCCATCACATCAGAAAACAAAGGCTGCATGTGGTGGAGCACACCTTTAAACCCATCCTTGGGAGGCAGAGATAGGCATCTCTGAGTTCCAGGTCAGCTACAGTTACATGGTGAGACCCTGCCTCAAAAACAAGTTTAGAGATGCCTCCTTAGGTAAAGTGCTTACAGCACACGCATAATGACTGAATCCAGAACCCATAGAACCCAGCTGTCTTAGGGTTTCTATTGCTGTGAGAAAACATGACTAAAATCAACCTTAAGAACAAAGAAAGGGTTTATTTCAACTTAGAGTTATAATCCTGCATGAGGAAAGGTAGAGTGGGTACTCAAGGCAGGAACTCCATGGCAGAGGCCATGGAGGGATGCTGCTACTAGCTTGCTCCTTCCTGGCTTGTTTAGCTTGCTTTCTTGTAATAACCTGCCTGGGGGTGGCACAACCCATATCAACCACCATCAAAAGAGAAGGCACCACAGACTTGTTGTCTATTGACCAGTCTTGTGGAAGCACTATCTCAAGTAAGATCCCCTCTTCTCAGGTAAATGTCTCAAATTGACAAAGGAGTTGACCCCTGTCAGCTTAACAAACATTTTAAATCATAACTTTCCTTTTTTGTTGTTCCCAAGATGTCATATTAATATCAACATCACAATATAAAACATACTCCAGACTTTAAAAGTCTCATAGTCTTTAAGAATTCAAACACTTAAAAAGTTTAAAGTCTTATAAATATCTAAAGTCTTTAGAATTCCAAATTTCTCTAAGGTCTCATAACTATGGGTTCTTGTAAAATCAAAGACAGGTTAAATGTTTTATTTCAAGAGGAAAGACCCAACATACAGTCAAAGGAAATTAAACTGAAGTCCAACATTATGAAGTTTAAGTGTCACATTCTGAGACGCACAATCTTCTAGGATCTGAAGGGCTTGCATGGTACACACAGCCTTTTTTTCTAGGCTCAGGCTAGCTCCACTCTAAAGTTGTCGCAGTCCTTGGTGGTCATCCAGTGGTGATGGGGTCTCCACTGCAACAAGGCCCCTTTACCAATAGCCTCTCCTGGGCTTTCCTCAGGGACTGTGTGATTCCTAGTAGAAGTGGGCCTTCTACTGCAACCAGGGCTGCACATCACCAGTCCCTCTCCATGATCCAATGATGACTTCAAAAGCAGCACCAGACTGGCGACTCTTACGTGTTAGCAGTTTTGACTGCCAGCATGGGATGCAGCCTTGTCCCACTCTGGAACAGAGGTTCTGTGTGCTAGAAGATTTCACCTAAGTGATGTTTTTTTTGTTTGTTTTGTTATTTTCGTTTTTTCAAGACTCATTATGTAGTTCTATCTTATAACTCACCATTTTTACCAGGCTGGCCATGAACTCACAGACTCTTCTGCCTCTGCTTCCCAAGTGCTGAGAATGAAAGTGTGCACTGCTATGCTTGGGCCTTAATAGATTTTTTTTTTAAGATTTACTTTATCCATATGTATGAGCACACTGTTGCAGTCTTCAGACACACCAGAAGGGGACATCAGATCCCATTACAGATGATTGTAAGCCACCATGTGATTGCTGGGACTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCTTTAATAGAATTTTAGGGAACTTTTAACCTTCTCTCTGAAACTTGACAAGCCAGGCCTTCATCCTCTGCACTGATCTCAGCATTATCCTAAGTTCTCACAACAGCTCATTAGCTTAGACAACACTTAATGTTTTTTCCAGTACCAAATTCCAGAGTCCTTTCTCAGTCCTCCCTAAAACACATGGTTAGTGTTATATCAGCAGTACTTGACAACCTAGTACCAATTTCTTTCTTAGCGTTTCTACTGCTGTGATAAAACACCATGACAAAGAGCATTTGGGGATGGAAAGGATTTCTTTTACCTTGCAAGTGTAGTCTAAGAAGGGAAGTCAGAACAGGAATTCAAGGCAGAAACCTGGAGGCAGAAACAGAAGGTCTTGGAATTGCTTACTTCCTTGCTCCCACCTGGCTTGCTTATAGCACCCAGGACCATAGGTTTTGTGGCTTAGCTGCCCATGGGCATAGCAGGGAAAGACAGCAGGGCAAACACCAGAGCCTCCAGTTCCATGTCCAGCTTCCTGCACTTGTCATATTATTTGGACTGCCAGGTCCACAGGTAGGCTGGCCCTTGCACCTCTACTGTCTGTGGCACACAGAGCCCCTCTGTTGGGCTAGCTTCACTTTGTACCTGTAGTTTTCTTGACAAATGTACTGTGGTTCTAGAATTTCCAAAATTCCAGATTCTCCATTGTAACTTAGGTTTCACTTTCACAGCTTTGTGCAGGAGCCTCCTTGAAAAGGCACCAATCCTGTCACACATGGCCTGGCCCTTAAATGGCCTTCATGTAAGCCCCCATGACTCCCTTATTTTTGAATTTTTTTTTTTATGCCCTAAAAAATCAGTGCCATGTGTTGCAGAGTTTTGCTTCCAGTTCAAAATGTAGCCTGGTCCACTTAAACTAAAGTTGTAAGGACCTCTGTTTGCTTTGGTTAAAGATTAATTGAAAACTTTTTCCTAAGTGCTATTTGGCATTCTCCATTTAAATGAAGTGAATCTGTGGGCGGGGTCTTAGCCTATGCACTTTCCCCCTTATCCCAATGGAATGGTGGTATCACTTTTCACACCCTGTAACTTTGAATGTACGGCATATAGTCCTTTCCCCACCAAACTATTTTTCCCCCGTATTTTAATATCCTACTTGCTCCCTCTCCCTGTGGATGTGGATAAGAGTGAGCAGTTGCCTTTGCATAGCCTTGAACAGTATACCCTGTGTAGAAGTATCTTCTGCTAAATTAGTCCCATTACTCTAGTTCTTTTCTAACCTATAGCTCTAAACTGCTACATTCCCTCCCCAAAACCAGTTCCAAAGGTCTAAGAACCACATGATCAGAGTCTAACTGTTCTACTGCTATGAGGAGACCATGGCTAAGTCAACTCTAAAAAAGAGAAGGTGTTTACTTGGCTTACTCACAGTTTCAGAGGGTTCATCTGTCTGTGATTGTCATGGCAGGAAGTAGACCAGCATGGCTGGAGCAGTAACTGAGAGATTAACATCCTGACCCACAGATGACAGGCAAAGAGAGACAGACATTGGGTTTGATATGGACTTCTGAAACCTCAAAGCCCACCCCCAGTGACATCTCTCTGCCAAGACCACACCTAATAATTCCTGAATAAGTCACAGACTGGGGGCTGAGCACTTAAATACATGAGCACATGTTGGCCATAGTCAGCTTTATCACAGCAATAGCCTCACCCCTCGCTACTATTTCTCTATATTACTTATTGTTGTGATAAAAATAGTTTAAGGAATAAAGGGTTTATTCTGGCTAATAGCTTTATACTTCAGTTCACCATGGCAGCAGGAGTGTGAGGCAGCTGGTTACTACCAACGTTTAGGGTAGGTCTTCTACCTTAGTTAACTCAGTCTAGACACTCCCTCACAGACACCTCTAGAAGTTTGTCTTTACCTGATTCTAGATCTTGTCAAGTTGACGAGATTAACCACCATAGGAACGGTAAAAGTCAAAGCACCCTGGAAAGATGGCTCAGCAGTTAGAAGCCCCTATTGCTTCTAGGAGGACCTGAGTTCAGTTCCCAGTACCTATGTGGAGATTCATCTTCAACCATCTGTAATCCCAGTTCCAGAGATGCTCTTCTGGCCTCCTTGGGCATCAGTCACACATGAGGTGCACATGCATATAAAGTCAAACTTTTTTTAAAAAGCTGAATTGAAGCATTAATTATATTGGTTGGTGAGATCTGGGTGGCCTGTAGTAAGACATAAAAGACACAAGGTTTGTAGCGGGATTATCTTTCCTCACTGCTAATAATAAAGGAGTGGAGGTAGGGTAAGAGCTGTGAAGGACATGAGAGCCTGCTGGTCCTGGGAAGCCACCAGAGGGCGCCATTGGTCTGCTTTGCAATTGAGGTCCTTGCTCTTTTCTTTTTCCAGACACACTTTCAGGGATTCGTGTAGCCCAGACTGGCCTCAGACTGGCTTTGTAGCTAAGGATGATTTTGATCTTCTGACTATTTTGTATCTATCTCCTGAGTGCTATGATTATAGGCATGTGCCACCACACCTAGTTCACACAGAGTTGGGGATACAGCCCAAGGCCGAATGCATGCACCAGCTGAGCCACGTCTCCAGCCCCTCGGATGAAGGAGGTTTATTAGAGATGAAGTAGCTAGGTGTTTTTAAAAAGTCAGGAAGTACCAGGCATGGTGGTGCACGCTTTTAGTCCCAGTACTGATGAGGCAGGGGCAGGTAGAGCTTTAAACTTGAGGCCAGCCAGGACTACACAGTGAGGTTTACAGTTGAGCAGATGTGTGCGAGAGGTCACTTCGGTAAGGGCAGACGAGGGCCGGATGAGATGAAGATGGTGCTGGGTAGGAGACTGGAATAGCACAGACAGCAAGCAAATGCTTGTTGATTGAACCTTCTCGGGCGAAGACACACTATGTGGTTTTCATCACGAAGCATTGCACCTTCCTTAAGCTGGGGTTGTGACTCTTAGATGAGCCCAGATGCATTACTAAGTGGGTCCCCTAAAAGCTGTGCAGGACTGTTGCTGTTTTCACAAACCCATTTTGAGTATGGCCTGCAGAGCCTGTAAGATTTTAAATTCTGAGAAGTTAGTTGGACTCAAGACAAGTATCCAGAACACCCCACCTGCAGCTCTACTCCTATCGCTTGTTTGCTTTCTTGGCTTTCCCCTCGTTTATTTTGTGAAGATGGGGTGTGTCGTGAGCTGAGGGTAGAGTTAGAGGATAGCTTGTGGAAGTTGGTTCTCTCCTCTCATGCACGGCTCAGGGATCAAATGCAGATCATCAAACTTGGTGACAAGAATCTTTACGTTCAGAGTCCATCTTGCTACCTTTCCCCCCTTGAGGCAGGTGTCATGTGTCCCAGGCTAGCCTCAGACTTTCTGTGGAGCAAAAAGTGACTTTTAACTGGAGTTCTTCCTACTTTGACCTCACAAATATAGGGATTGGGCCTGTGCCAACGTGCCCAGGTATTGCAGTGCTAGAACCCAGGGTTTCACATGTGCTAAGCAAGCACTCTGAGCACATTCCCAGATCCAACCCTGTTTGGGTGTTGTTTGTCTTTGTTTTAAGATTTATTTGCCAGAAGAGGGCATCGGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAATTGCTGAGCATCTCTCCAATCCCACCAACCCTGTTTTTGAGACAAGGTCTCGTGTAGCTCAGACTATGCTGTAACTTACAGTCTGCCTGCCTCAGCTTTCTTATGCTGGGATTGTAGGTTTATATAACCTTGTCTAGTAATTAACTTTTTTGTAAAGATTTATTTTTAATTGTGTGTTTTCACATGTGTGTGCAGTACCTTTGGAGACCCTGAGAGGGTGTTAGATCCTCTCAAACTGGGGTCACAGGTGGTTGAGTCCCCCTATGTAGGTGCCAGGAGCTGAGCTCTAGTCCTCTTGAAGAGTACATACTCTTAACTACTGAGTCATCTCTTTAGCCCCATGATCAGCAACTTTATGTTCCGTAGGAGACTGAAGGAAGCAGCTAGGGATAATGGCCAGTGGTAGGGTATTTGCCTGGCATATACAAGGCCTCGGGTTCTTTGGGGATGATGGGCCAGAGGGAGAATACTGATAACTATTGTTGGGATGGAAATTAATAAACATGTAAGGAACCTCTGGTGATATAAATCTAAACAGGATTATATAGCAGTTCTCTAGGGAAAGGAGAGGGCATTTCAAGACAGGTGAGGGTGGAGGTGGTGGGGTGATATGTTGGTGATAGCTGTGTTGGGCCTTCAGGATATAAGGAGCTCCACCTTTGAGAATGGCTTCTCATTACCTCATTATGTGCCCATTCCAG
Seq C2 exon
ATCTTGAAGATACTCTCAGGGAAGGTAGTGGTAGGACATGCCATTCACAATGACTACAAAGCCCTACAGTACTTTCATCCCAAGTCCCTCACTCGAGACACTTCCCAAATACCGCTCCTCAACCGGAAGGCTGACTGCCCAGAAAATGTCACTTTGTCACTGAAGCATCTCACCAAGAAGCTGCTGAGTCGGGACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011402:ENSRNOT00000015471:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.502 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=26.0)
A:
NA
C2:
PF0092919=RNase_T=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]