HsaINT1016783 @ hg38
Intron Retention
Gene
ENSG00000143319 | ISG20L2
Description
interferon stimulated exonuclease gene 20 like 2 [Source:HGNC Symbol;Acc:HGNC:25745]
Coordinates
chr1:156724148-156728435:-
Coord C1 exon
chr1:156726906-156728435
Coord A exon
chr1:156724349-156726905
Coord C2 exon
chr1:156724148-156724348
Length
2557 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTTCCCACACTTCTTCCAGATC
3' ss Score
9.75
Exon sequences
Seq C1 exon
TTAGCTGGACCCGTCTGGGAGGTAGGTTTGTGAGCGTGAGAGATCGATCTGTACCGCGGGGATCCGAAGTATGCTTATCCAGGTGGGCTGCCTCAAGCCTCGATCCCACCCCCGCGCTGGTAGATGGTGTCAAGGTCCTTGCGTGGGAGAAGGACTTGGGTGAGATGCATGCGGAGATTGCCCCCAATTCCGGCCTGGAGCCAAGGGAAAGGGATGCCTGGATTTGTGTCTCTATTGGTGGTCCACGCTGCGGATGCCTGGGTAGCCCAGAGGTTATCTACGCCATACTTCTCACTGTTTTTGAGCATACCTAGATGTTCCTTTCCTAGGCGGAGTATAGATCGCACGTGTTCTAGCCTCTTAGACTCAGAGGGTTCGAGCTCTATAAGCCCCTCCACTCCCTTCATTTTACAAATGAGACTCAAACCTAGAGCGCGGTAATGACCTTACTAAGACCAAATGGCTGGTGAATTGGGCTTCACTAGAATCCAGGCTTGCTGGCTAACACCAATGCTCCCTCCATCATTTCATGTTATGTTTTCATTTCCCCTCTGTCTGAGAGATTGCTCTGATGTCTTTCCTTCCATAAGTCCTACGGAGATCGAGCTTACCTCATTTTTCTCCCAGGCCTAGGAGCTCAATTACCAGGATCACTTTCTTCCCCAGGGTGTACTACAGACCTCCACATGTTGGACAGTAGGATTCAGCAGAGAATGAGTCCCACATCCTCTTTTCATCCATAAGCCACTCTTCCCAACTACTCTTCCGCCTTCCATTGTCCCTATGTCTACTTTACTGCTCAATCTGGATTTTGGGGAACCTCCTCCCAAAAAGGCATTAGAAGGAAATGCCAAGCACCGAAATTTTGTCAAGAAGCGGAGGCTCTTAGAACGGAGAGGCTTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGCGCCTAAGTTGCACTCTGAACCTTCAAAGAAAGGGGAAACTCCTACGGTCGATGGCACTTGGAAGACCCCTTCCTTCCCAAAAAAGAAGACAGCTGCTTCCAGCAATGGGTCAGGACAGCCCCTGGACAAGAAAGCTGCAGTGTCTTGGTTGACCCCTGCCCCTTCAAAAAAGGCTGATTCTGTTGCTGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGTGCCCTTCCAAAGATCAATAGCCACCCAACCCGCTCTCAGAAGAAGAGCTCCCAGAAGAAATCCTCTAAAAAGAACCATCCTCAGAAGAATGCCCCACAGAACTCCACCCAAGCTCATTCAGAGAATAAATGCTCCGGAGCATCCCAGAAGTTGCCACGGAAGATGGTGGCAATTGACTGTGAGATGGTGGGCACAGGACCAAAGGGGCATGTTAGTTCCTTGGCTCGATGTAGCATTGTCAACTACAACGGAGATGTGCTTTATGACGAGTACATTCTTCCCCCCTGCCACATTGTGGACTACCGAACCAGGTGGAGTGGTATCCGGAAGCAGCACATGGTGAATGCCACACCCTTCAAGATTGCTCGAGGCCAG
Seq A exon
GTAAGAAGCATGGGGCTTGATGGTGGCAGGGAGGTGGATGGAGAGAGGTCTAAATCATTTTTCAGCAAAGGATATCACTATGGGAAGACACCAACGTTTGTGGAGGGAGGGAGGAGAATCTATCAGTTGTTGAAGAAGGCCCCCTGTCGGTGGAAGAAGCAGTGAAAGTCAGGAAGGTACAATTAGCTGGTGTCACAAACTTCATTGGTCAAGATCTATTTTAGCCGGGCGCAGTGGCACTTGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCGGGAGAATCGCTCAAGCCCAGGAACTCAAGCCCTGTCTGGGCAACATAGCGGAACTCATCTACAAAAAAGTTAGCCAAGTGTGGTACATGCCTGTAGTCCCAGCTACTCAGGAGGTCGAGGCTGCAGTGAGCTGAGATCACACCACTGCCACTGCACTCCAGCCTGAGCGACAGAGTGAGATCCTGTCTCAAAAAAACAAACAAAAAAACTATTTTAGGTTCTAAATTGGGTCTGGGGAACTGGGAATCTGCATAGAAAAATAACAGCAAGTGATGAAACTAGACAGAGCTGCAGACACCAGTGTCAGGAGAAAGGGCTTGATTTGGAAAAACCTTGCGAGTTGGAGCCTAAGCTTGAGAGAGGAAAGGTGGAGAGCTCGTCCCAAGCAAAAAGTAGCCTGGGGCAAGTGCGGAAAGTGGTGGTGGTAAGAGAGGGCAGAAAGTTGACAGGAGGAGCTGGGGTATATATTGTCCAACTGGAACAGGTAACCAGTGAACGGCATAAACGGCACAGGGCCGGCACTTCGGGTTGTCATCTCACTCCTAGCCCTGTGCTGGCCATGGAGCGCAAGGCATGAACGGAAAGGAGAGTGAGCTGGGAGGGGTGAAAGAGGAAGTGAAGGGAGAGCAAGAGACCTGCTGGTCTCAGGAGGCCGCCAGAGGGCGCCCTTGGTCCACGTCTTTGCAGTTTCAGGTCCACACTCTGCCCTCTCTGGACACGCTGTTCCCATAATGCCTTATATGCGGTCAGTTGGAGGAGGTTCGTTAGAGGTGAGGTGACTGACTATTTTAGAAAAGACGGAAAGAAGAGTTAAACATCTTGTGCACAAAGGGGCGCAGCCAAGCAAAGGCATAGGAGAGGCAGAAGATGGGACGGGTCTGAGACAGCAAATCTGCCCAGCTTTGATGAGGGCTATATGTCGAGGTTAATAAGAAGTGAAGGTGGTGGTGGACAGTAAGTAGGTGAAGTCAGGAGTAACGAAATATCTAGTTCACGGGACTACGTCTGGTTTTCATCATAAAGCACTTCCCCAGTGCCAAGCTGGGGTTATGAGACTAAGGTATGTCCAGATGAGCCTAGCCCCTTCAGAGGGGGTCCCTTTGGGAGGCTATGCAGGACTGTCACTTTTGTTGAAAACCTGTTTGGAACCTCATTTGGGAATGGCCTTCAGAGCCTGTGGTGTGTTCTTCGGTTGTCCTCATTGGTAGCATGTCCTCCTACTTCAAGAGCCTGAAATGGCTAGGTGTGGTGACATGTGTCTGTAATCCCAGCTACTCAGGAGTTTGAGGTGAGAGCATTGCTTGAGCCCAGGAGTTTGAGGCCAGCCAACCTGGGAAAAATAGCAAGACCTCATCTCTTTTAAAAAATAAGTTACCTGAAGGCCAGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGCCTGAAGCGGGCAGATCACAAGATCAGGAGTTCAAGACCAGCCTGGCCCATATGGTGAAACTCCGTCTCTACTAAAAATACAAAACTTAGCCAGGCATGGTGGCAGGTGCCAGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAAACGCTTGAACCCGGGAGGCGGAGGTTGTAGTGAGCCAAGATCGCGCCAGTACACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTCAAAAAAAAAAAACAGTTTCCTGAAATATTGAGAAGTTATTTTTATTTTACTTGGTTCCAAAACTAGTGTGAATAAGGTTGCTTCTGCAACTTTAGTTTATATGTGATTCTTAATTTTTTACGGTTTGTAGACTCTGAGAATTTGATGAAAGCCACAGATTCTCTTCCTCTAGTACCCATACACATCTAATTGCATGTAATTTTGGGCTTTTGTTAGCCTCCCTGGAGCCCGGGTCCCAGCCATGTGTCTAAGGCCAACATAATGGTAATAGTTAAAGGACTTCATGTAGCAAGCCAGAACTGAACTAAATACATGGACATCTCAAACATGAGTGTCATTTAGGACTGAAGGCAAATTAATGTCATGGGGTGGAGATCAATAAGAAGGTAAGGAGCCACTGGCAGTATGAGTCCAAACAGGGTATACCATGGAAATCACCTGTGGAAGAGGAAGGTGGATTCCAGAAGAAAGAAAACTTGTGGGAGTGAGCATTTCAAGGATGGAGAGGTAGGCAGTTGGTGAAAGAATCCAGAAGGGATTGATGGTCATGTTGGGCTTTCAGAATGCAGGGGTTCCACTTCAGTCTTCCTTCTCACCACTCTCTTCCCACACTTCTTCCAG
Seq C2 exon
ATCTTGAAGATACTCACAGGGAAGATAGTGGTGGGGCATGCCATCCACAACGACTTCAAAGCCCTTCAGTACTTTCACCCCAAGTCCCTCACCCGTGACACCTCCCATATCCCCCCCCTCAACCGGAAGGCTGACTGCCCGGAGAATGCCACCATGTCTCTGAAGCATCTCACCAAGAAGCTGCTAAACCGGGATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143319:ENST00000313146:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.663 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=27.7)
A:
NA
C2:
PF0092919=RNase_T=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains