HsaINT0084721 @ hg38
Intron Retention
Gene
ENSG00000107147 | KCNT1
Description
potassium sodium-activated channel subfamily T member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr9:135755121-135756932:+
Coord C1 exon
chr9:135755121-135755169
Coord A exon
chr9:135755170-135756872
Coord C2 exon
chr9:135756873-135756932
Length
1703 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTCCCTTTCCTGACTCCCAGGTC
3' ss Score
10.26
Exon sequences
Seq C1 exon
GGCTCCTATTCTGTGGGTGGAGAGAAAGATGACACTGTGGGCGATCCAG
Seq A exon
GTGAGTGCCCTACCCTGCCCCCCTCCCGACTGCAGTGGTGCTCAGTAAGCACTGAGGACCAACCCAGACTCAGTAAGTAGGGAACCCAGGCTCGGTGAGCACTGAGGACATACCCAGTCTCAGTAAATGCTAAGAACAAACCCAGGCTCAGTGAGCACTGAGGACAGACCCAGGCTCAGTAAGCAGGGGACCCAGGCTCAGCAAATGCTGAGGACAAACCCAGGCTCAGTAAACAGGTGACTCCAACTCAGTGAGCACTGAGGACAAACCCAGCATTTACTGACCCAGGCTCAGTAAATGCTGAGGACAAACCCAGGATCAGTAAACAGGGACCCAGGCTCAGTGAGCACTGAGTACAGACCCAGGCTTAGTAAGTAGGGGACCCAGGCTCGGTGAGCACTGGGGACAAACTCAGGCTCAGTAGGCAGGGGACCCAGGCTCAGTGAGCACTGAGGACAGACCCAGGCTCAGTAAGCAGGGAAACCAGGCTCAGTAAATGCTGAGGACAAACCCAGGCTCAGTAAATAGGGAAACCAGGCCCAGTGAATGCTGAGGACAAACCAAGACTCAGTAAACAGGTGACTCAGGGTCAGTGAGCACTTAGGACAGACCCAGCATTTACTGACTCAGGCTCAGTAAATGCTGAGGACAAATCCAGGCTCAGTAAATGCTGAGGACAAACCCAGGCTCAGTGAGCACTGAGGACAGTCCCAGGCTCAGTAAGCATGGGACCCAGGCTCAGTGAATGCCAAGGACAAAGCCAGGCTCAGTAAAACAGGTGACTCAGGCTCAGTGGGCACTGAGGACAAACCCAGCATTTACTGACCCAGGGTCAGTAAATGCTGAGGACAAACCCAGGATCAGTAAACAGGGGACCCAGGCTCAGTGAGCACTGAGGACAGACCCAGGCTCAGTAAGCAGGGAAACCAGACTTTAGTGAATGCTGAAGACAGACAGGCTCAGTAAGTAGGGAACCCAGGCTCAGTGAATGCTGAAGACAAACTCAGGCTCAGTAAGCAGGGGTCCCAGGTTCAGTGAGTGCTGAGGACCGACCCAGGCTCTACTGCTCTCCACACAATTTTCCCAGGGATCCCTGAGGACTTCCTGACCCCCTCTGTCTGCTTCACCACCTGAATCTCTCCCTCCACTGACCCATCTGTGTCCTTGCTGTTTTCCTGGGGTGGAGAGTGCACAGGCCAGGTCCCTGGCTGGCTCCTGGGTGGGTGACCTAGTTCATGACTGGGTCCCATGTCTCCATCTGAGACCAGAGAGGGTCTTTCACACCCACCCCTATCATGTTCCAGAGGGGTCAGTAGATGCCTGTGCTGAGAGGGGTTCCGTGGGGGAAAACCAGGTCCACTGAGCCTCCATCTCCGTTCCCTCCCCACCAGGGCAGCGGGATAGCCGCTCTCTGGTGTCTTCCTGAGCGTCCTGCCTCACCCACTGCACCCTCCATCCCACCCTGGGCCTAGAGTGGGCGGCCCAGGAGGACCATGGTTTCAAGACTCCATCTGCCCTCGGCCCTGGCGGGGGTCAGCCAAAGGCCTTGGTGGCTAAGACTGTCCTGACATGGGAGTGAGGGTCAAGGCAGACCCCAGACACACACCTGGCTTTGTGTGGTACCTGCCCGCGAGGCCTGTGGGGTCAGGCCCCAGCCCCAGCCCCGGCCTGCTCCAGAGCTCCTTCCCTTTCCTGACTCCCAG
Seq C2 exon
GTCATCGTGGCCATAATAAGCTTCCTGGAGACGATGCTTCTCATCTACCTCAGCTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107147:ENST00000628528:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development