HsaINT0084724 @ hg38
Intron Retention
Gene
ENSG00000107147 | KCNT1
Description
potassium sodium-activated channel subfamily T member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr9:135757298-135758508:+
Coord C1 exon
chr9:135757298-135757381
Coord A exon
chr9:135757382-135758413
Coord C2 exon
chr9:135758414-135758508
Length
1032 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGC
5' ss Score
5.06
3' ss Seq
AGCCACCACTCCTTCCACAGAAT
3' ss Score
7.01
Exon sequences
Seq C1 exon
ATCTTCTGGCCGCCGCTGCGGAACCTGTTCATCCCCGTCTTTCTGAACTGCTGGCTGGCCAAGCACGCGCTGGAAAACATGATT
Seq A exon
GTAAGCCGGGGCGGGGGGTGCAGCTGGGACTTGGGGGGGCCACCCTCAGCCTCACCGGCCCTGGAAGACACTGTGCGACGTAGCCTGCCACGCCCCGGCCCTGGCATGACCTGTAGAGGACCGGGAAGCCAGGGCAGCAGAAACTCTGTCTCTGCTCCTGGAAAACATCCAAGCCAAGCCCCGAATGCCCTCCTTCCAGGAAGAAACTCAATCCCAGAGCTTTTCCTAAGCCTGGAAATGAAATGGCTGGCAGGAGGAGGAGGGACAAAGTGAAGGGTGTGACAAACCCAGGCCACGAGGACCAGGGCCACAAACACCAGGCCACACGCAAACTGGGGCCACGGGGCCACAGGCAGGCCCTGTGCTGAGCATCTCAGGAAACCTGGGCCACGGGGCCACAGGCAGGCCCTGCTCTGAGTGTCTCAACATGGTCCCTGTCATGTGAATGGCAGCAGTCAGTTCCCTAGGCGCCCACCCTCTCCAAGCCAGACCCCTTGACTCACAGCCCCCATTCCTGCCCCAGTGGTAAATCAGCGTTACCATGCTGGGTCCAAGCCTTGCACACTAACCAGCCCTCTGACCTGAGACTTAAGCCTCATCCCCGGGGATGTAGGCAAGATGGGGACCCGTCCTGAGAGAGGACAGCAGAGGGGGTGCCCTACCCAGGTGCAGGCTGCCCGTGGGCCTCAGCGGAGACGCAGGTGTGGCCAGGCGTGGGCTGCCCCTTGGGCCTCAGCCGAGACACAGGTGTGGCCGTGGGCTGCCCCGTGGGCCTCAGCCGAGACACAGGTGTGGCCAGGTGCAGGCTGCCCCGTGGGCCTCAGCCGAGACGCAGGTGTGGCCAGGTGCAGGCTGCCCCATGGGCCTCAGCCGAGACACAGGTGTGGCCAGGTACAGGCTGCCCCGTGGGCCTCAGCCGAGACGCAGGTGTGGCCGGGCCGTCTGCTTTCCACTGTCCTTCTAGTCTCTATTCATTGGCTCCTGGCGGGGTCCACAGTCCCTGCCCGCTGACAGCCACCACTCCTTCCACAG
Seq C2 exon
AATGACTTCCACCGTGCCATCCTGCGGACACAGTCAGCCATGTTCAACCAGGTCCTCATCCTCTTCTGCACCCTGCTGTGCCTCGTTTTCACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107147:ENST00000628528:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0788511=Ion_trans_2=PU(12.5=31.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development