HsaINT0102190 @ hg19
Intron Retention
Gene
ENSG00000087995 | METTL2A
Description
methyltransferase like 2A [Source:HGNC Symbol;Acc:25755]
Coordinates
chr17:60501246-60501671:+
Coord C1 exon
chr17:60501246-60501373
Coord A exon
chr17:60501374-60501579
Coord C2 exon
chr17:60501580-60501671
Length
206 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATC
5' ss Score
3.45
3' ss Seq
TGCCCGTTTGATTTTCTCAGGGA
3' ss Score
8.56
Exon sequences
Seq C1 exon
GTTTCCGGCTCCGGTGTCATGGCCGGCTCCTACCCTGAAGGTGCACCTGCAGTCCTCGCCGATAAGAGGCAGCAGTTCGGAAGCCGGTTCCTGAGAGATCCGGCGCGCGTCTTCCACCACAATGCCTG
Seq A exon
GTAATCACTCTGCCCCTTCGCCCGGCCTGTCGCTGACCCTCTGTCCCGCCGCCTCGGAGCACTCCGAAAAGCCCCTGACCGCCGGCCACGAGTCAAGCTGCCCTACCCGAGGCACTCTCCAAGGGGAGAGAAACTCCTAGGCCAGCGACTCACCCTGCCCGCAGCCAGGACGTGAGGCCCCTAAGCTGCCCGTTTGATTTTCTCAG
Seq C2 exon
GGACAATGTGGAGTGGTCGGAAGAGCAAGCCGCGGCGGCGGAGAGAAAAGTCCAGGAGAACAGTATCCAGCGGGTGTGCCAGGAGAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087995-METTL2A:NM_181725:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.344
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATGGCCGGCTCCTAC
R:
CTTGTTTCTCCTGGCACACCC
Band lengths:
206-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)