GgaINT0143062 @ galGal3
Intron Retention
Gene
ENSGALG00000000396 | METTL2A
Description
NA
Coordinates
chr27:2238733-2240485:+
Coord C1 exon
chr27:2238733-2238848
Coord A exon
chr27:2238849-2240393
Coord C2 exon
chr27:2240394-2240485
Length
1545 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CACTTTAATTTTTACAACAGGGA
3' ss Score
6.44
Exon sequences
Seq C1 exon
GCTTCCGGCGGCGCCCAGCCAGTCATGGCGGCGCCCAGCGAGGCGCCGGAGCGGCGGCGGCCGTTCGGGAGGCGCTTCCTCACCGACCCCACCCGCCTCTTCCAGCATAACGCCTG
Seq A exon
GTGAGGGTGGCCGCGGCTTCCCCGCCCCTGCGGGGTTCTCTCGTTCGCATCCCTGCCCGCCCCGTGGTGCCTCTCCGCGCTCCTCCGGGCCTGGTGTGCTGTCCGCGGCCTGCGCTCCCCGAGCATCGCTCCTTGCCGGCTCCTCTCCGCGGCTTAAGACATCGTTCTCACTTCTCTCTCCGCGCCGAGCGGTTGGGGGCAGCTGTGGGGATGGGGCTGTGAGGGGGCGGGAGGGCCTGGAGGTGAGGAAGGGCCCGGCGCTGCTCGGCCGCTGCTGGGGAGCACTCATCCCTTCGGTTCTGAGCTTGCCTTGGTGGAAGCGGTCAGGATCCAGCAGGTGCCCTCCGTACGTCGGGATTCTGCTCAGAACTGCACTGCTTCGAAGCAGTCATTCTGTTGCTATAGCTCTCAGAGGTCTACAACTCTTTAACATCTGTGTGCACGAGCAGCTAATGCATAAATTGAGTGAAGATAAATTTACCCATCTGCTGCCACGTGATGCTGTGAAGTCATGCCAGGCATTAGGATGGAGCAGGTCTTTGCTTGGAGAAAGCTGTTTTTTTCACAGATGTTAGGTGCCCAAATTCTTGAATTTCCTGGGAACTGAAGGTATTTTGCACTTCTAAAGTAAATATATCCACCTCAGGTCTCTGGTTGCTGTGTTCTGTTGAAAATTGGCTGTGTTTTAAGCTGTAATAAAGTTATGTGTGCATGCATCAGCTTGTCATTCATTTTGGGACTTACAAAGTGTGTCCTCAATGGTATTTCCCTGCAGAAATTCCTAATAATCTAGTTTTTCAGACACAACACTTAAGGCTTTGTTTTGCTAATTAGTATCAAAAGGCCAGTTCTTTCTGAGGCCAGGGTAGTGCCAGGGTAGTTCTTCTTGAGCCTTGTATTCTGCTTTTCATTCACTTGTTTTAAAGAAAAAAAAAAAAAGTCAGGTGAATCACCTTAATGACTGCGCAACTTTGTATGCACATTTAAGTTATTAGTAGGTTCTTAATGCATATTTTTCTCATAATTGGATTTAATATTAATATAATACTTCACCTTCCAAATAACCTTAGCTGCCTTTTTTCTTTTAACTTGAGAAAGAATGTAATTTTCAAAGATGGCTAAATGAAATGCCCATTTTGCTGACCTGCTTGAGTAAAAGTAGTTGCCTGCATAGGAAAGGTGTTTTGTTCTCCATGTGGGAAAGGCAGCTCCTCTCCAAAGAGGCCTATTTGTACTTAGTGGTTTTGAAGTAAGGATTTAGTTCTTCTAAACTTGGCTGACCATCAGACAGGTAAAAGGATTAGGGAACAGATTTGGTGTCTCTTGGGATCCCTTCCTGTTATGCCTTTTGAATGCTGCAAGCACAACTCCTTCAGAACTGGCAGCCATCCTTCCACGCTGGTAACTGTTACGTTGCTGCGGAGCTGGAGTTGGAGATGGCAGAAAAGCCCCCAGCTGTCCATTTGGAGAGCTATCTAAACCTCTTTTTCTCTGTCTTTGCCTTACAACTCTCAGCTGAGTAGTTCACTTTAATTTTTACAACAG
Seq C2 exon
GGATAATGTGGAATGGTCAGAAGAGCAGGAAGCCACTGCCAAGAGTAAAGTTCAAGAGAACAGCTCACAGCTATTGCCACAAGATAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396:ENSGALT00000000541:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]