MmuINT0098029 @ mm9
Intron Retention
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:104987739-104988181:+
Coord C1 exon
chr11:104987739-104987920
Coord A exon
chr11:104987921-104988089
Coord C2 exon
chr11:104988090-104988181
Length
169 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
TGCCCGTTTGGTTTTCACAGGGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
ACTTCCGGAAGGGGCGTGGCCCACAGGAAGTCCTCGCCTTCGGGAAGAGAAGGCGTTTCCGTCTCCGGTGTCATGGCGGCCTCCTTCCCTGAAGGCGTGCCGGAGACCGAGGACGGGAAGAGACCGCAGTTCGGGCACCGGTTCCTGAGCGACCCGGCGCGCGTCTTCCATCACAATGCCTG
Seq A exon
GTAACTGCCCTGCATCTCGCCCGGCTCTTCGCCAGCCCGGAGCACTTGGAGAAAAGCCCTGCCCGCTGGCCCTCCTCCCGCGGCGGTAGCTGAAGCGTTCGCCTCCCGAGGACCGACGTTCCCGGGTCCGGGACCGGTGGGCCTGAAGCTGCCCGTTTGGTTTTCACAG
Seq C2 exon
GGACAACGTGAAGTGGTCCGAGGAGCAGGCCGCGGCGGCGGAGAGGAAAGTGCAGGAGAACAGCTCCCCGCTGGTGTGCCCGGAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691-Mettl2:NM_172567:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=NA C2=0.604
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGCCTTCGGGAAGAGAAG
R:
CTTGCTTCTCCGGGCACAC
Band lengths:
243-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: