BtaINT0092007 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47512361-47512776:+
Coord C1 exon
chr19:47512361-47512479
Coord A exon
chr19:47512480-47512684
Coord C2 exon
chr19:47512685-47512776
Length
205 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TGCCCATTTAATTTTCCCAGGGA
3' ss Score
7.57
Exon sequences
Seq C1 exon
TCCGGTGTCATGGACTGCTCCTTCCCTGAAGGCGATCCTGCGGCCGTCTGCGGGAAGAGGCAGCAGTTCGGGAGCCGGTTTCTGAGCGACCCCGCTCGCGTCTTTCACCACAATGCCTG
Seq A exon
GTAAGTGCCCTACCCTTCGCCCGGCCTGCCCTTCGCCCTCAGTCCCAGCGCCGCAGAGCACTCTGAGAAGGCCCTGACCGCCGACCAGAGTCCTGCGGGCCTACTCTTGGCACTCTCCTCCCACGGAGGAGGCGCTGCGGGGCCGGTGACTCGCTGCCCGCGGCGAAAACCTGAGGCGCCTAAGCTGCCCATTTAATTTTCCCAG
Seq C2 exon
GGACAACGTGGAGTGGTCGGAGGAGCAGGCCGCGGAGGCAGAAAGGAAAGTCCAGGAGAACAGCACTCAGCGGGTGTGCCAGGAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458:ENSBTAT00000012443:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCATGGACTGCTCCTTCC
R:
CTTGCTTCTCCTGGCACACC
Band lengths:
207-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development