RnoINT0091765 @ rn6
Intron Retention
Gene
ENSRNOG00000006131 | Mettl2b
Description
methyltransferase like 2B [Source:RGD Symbol;Acc:1310240]
Coordinates
chr10:93354003-93354389:+
Coord C1 exon
chr10:93354003-93354126
Coord A exon
chr10:93354127-93354297
Coord C2 exon
chr10:93354298-93354389
Length
171 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
TGCCCGTTTGGTTTTCACAGGGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
CCGTCTCCGGTGTCATGGCGGCCTCCTTGTCTGAAGGCGTGCCGGAGACTGAGGACAGGAAAAGACCGCAGTTCGGGAACCGGTTCTTGAGCGACCCGGCGCGCGTCTTCCACCACAATGCCTG
Seq A exon
GTAACTACCCTGCACCTCGCCACCCCGGAGCACTTGGAGAAAAGCCCTGCCCTCCTCCCGCGGCGGTAGCTGAAGCGTTCGCCTCCCGAGGACGGACGTTCGCGGCTCCGCGACTCACCCTGCCCGCGGCGGGGACCTGTGGACCTTAAGCTGCCCGTTTGGTTTTCACAG
Seq C2 exon
GGACAACGTGAAGTGGTCAGAGGAGCAGGCCGCGGCGGCGGAGAGGAAAGTGCAGGAGAACAGTTCCCAGCTGGTGTGCCCGGAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006131:ENSRNOT00000008140:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCGGTGTCATGGCG
R:
CTTGCTTCTCCGGGCACAC
Band lengths:
214-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]