MmuINT0098029 @ mm10
Intron Retention
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:105126425-105126867:+
Coord C1 exon
chr11:105126425-105126606
Coord A exon
chr11:105126607-105126775
Coord C2 exon
chr11:105126776-105126867
Length
169 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
TGCCCGTTTGGTTTTCACAGGGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
ACTTCCGGAAGGGGCGTGGCCCACAGGAAGTCCTCGCCTTCGGGAAGAGAAGGCGTTTCCGTCTCCGGTGTCATGGCGGCCTCCTTCCCTGAAGGCGTGCCGGAGACCGAGGACGGGAAGAGACCGCAGTTCGGGCACCGGTTCCTGAGCGACCCGGCGCGCGTCTTCCATCACAATGCCTG
Seq A exon
GTAACTGCCCTGCATCTCGCCCGGCTCTTCGCCAGCCCGGAGCACTTGGAGAAAAGCCCTGCCCGCTGGCCCTCCTCCCGCGGCGGTAGCTGAAGCGTTCGCCTCCCGAGGACCGACGTTCCCGGGTCCGGGACCGGTGGGCCTGAAGCTGCCCGTTTGGTTTTCACAG
Seq C2 exon
GGACAACGTGAAGTGGTCCGAGGAGCAGGCCGCGGCGGCGGAGAGGAAAGTGCAGGAGAACAGCTCCCCGCTGGTGTGCCCGGAGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691:ENSMUST00000021030:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=NA C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGCCTTCGGGAAGAGAAG
R:
CTTGCTTCTCCGGGCACAC
Band lengths:
243-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types