HsaINT0103735 @ hg19
Intron Retention
Gene
ENSG00000108292 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:7138]
Coordinates
chr17:36880873-36886056:+
Coord C1 exon
chr17:36880873-36881229
Coord A exon
chr17:36881230-36881809
Coord C2 exon
chr17:36881810-36886056
Length
580 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTCCCTCCCTCTCTTTCCAGACC
3' ss Score
13.58
Exon sequences
Seq C1 exon
GAACACCAGACTGTTGTCTACCAGATGATCCAGCAGATCCAGCAGAAACGGGAGCTGCAGCGCCTGCAGATGGCTGGGGGCTCCCAGCTGCCCATGGCCAGCCTGCTGGCAGGAAGCTCCACCCCGCTGCTGTCTGCGGGTACCCCTGGCCTGCTGCCCACAGCGTCTGCTCCACCCCTGCTGCCCGCTGGAGCCCTAGTGGCTCCCTCGCTTGGCAACAACACAAGTCTCATGGCCGCAGCAGCTGCAGCTGCAGCAGTAGCAGCAGCAGGCGGACCTCCAGTCCTCACTGCCCAGACCAACCCCTTCCTCAGCCTGTCGGGAGCAGAGGGCAGTGGCGGTGGCCCCAAAGGAGGG
Seq A exon
GTGAGTAAGGGGCCCGGGGCCTTCCTGCCTCCCCTCTGAGGGATGGGTAGAGATGGATTGTCAGAAGGCTTATCATCAGGTACCTCAGCAGGGGGAAGGAAGCAACCCCTAGGTCAGCAAAGTACCCTGCCTCAGACCCCAGGGCCTCTGCTTGCACATGGGTGCCCTCCTGCACGGCCAAGAAAGATCCGATCTGAGCATGGGCTCAGAGGAAAAGGACCAATTAGAAAACAGCCTTCCTCCGGGAGGACCAATTAGAAAAAGCCATTTTGTTTCTCATCCGACCAATTAGAAAAAGATGACCCTCTGGGTAGGCCAATGTCAGAAAGGCCCTCTCCCTCTCCTGAGGGCACACGGCCTTAGCTTGCACATGCCCACGCAGCCCGGTGCTCTTCTGCAGGGTGGTTTCACACCCCTGCGCATCGGCCCTGGTGCACACCCCTCAGAGCCCAGGCCAGAGGCTTCCATTGGCCCCGTTTCAGTACCCCACAGCAGCTTTCTTGGCCTAGGAAGCTGTTCTTATCTGGGGGTTAGGACCTGACACTTTCCACACCCCCGGCCTCCCTCCCTCTCTTTCCAG
Seq C2 exon
ACCGCTGACAAAGGAGCCTCAGCCAACCAGGAAAAAGGCTAAATCCACCCTTACCCCTCCTGACCCCCCCAAGTGGAGGGAACAGATCCTGGCCTGAGGGGTCCTAGCCTGGAGCAGGCGCCTGCGCCCAGACCCTGGAGAGCCTTGACCCAGAGCCTGTGCTGAGGTCCAGGGAGTGTGGAGAGCTCCTGGTGTCGAGGACTGAGACTGAGAGGGGAGCCCCCTCCATCTGGCCCCCTTCCCTTTCCGCACTGTCCGCTTTGTGAGGCTCAGAGGAAGGACAGTCTGCAAGCCCGCCTAGGAGGTCCATCCCCAGCAAATGTTTTGGAGGTCCCCCCAGAGAGCAGAGTGGGCCATGGCAGAAGTAGGGGGTTGGTTGGACCTGTCACATGAAATGGATCAGCACTTGAATGGGGAGAAGTGGAGGGAGAGGCCCTGGGCCTGTCCCTGCGGGGAAATCTTTTATGGAAGAAGGGCTGGACCCACTTTACCTGCAGTTTCTTCCCAGCTCGGGCAGATGGCAGAAGGGACCCCTTGGACTTTTTCTCGCCATCCCTCCCCCCAGCGCAGGGGCACAAGCTGAGCTTGTAAAAGCCCACAGATGTTGGGGGCTGGAGAAGGGGCAGGAGAGCATCACACTCAGCCCCAGCCTCCTCAACCTCTTGGGGCCCCGTGATGGGGAGGAGAGGGCAGGTGCGGGGAGGCTCTGGCCTTCCTTGGTGCCCCGCCCTTTGTTTGCACTATTGGACTTAGGAGTGCCGAGGGTGGGGAGATGGAGCTGCCCGTCTCAGTGTGTGAGTGTGTGTGTGCGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGCCTGTCTCTCTCCTCCTGGACCCAGGGCAGCCAAGGGCAGGGATAGGCGCAGTGGTCAGATGAAGCAGCGCCAGAGAGGGGACCTCCCAGCTCTTATTTGCACCCTCCCCACCTCACCAACTTTGGTCCCTCTCTGGGGGCATGAATGGTTAACAAACACCAGAGCAGTACTCCAATATTGGAGAGTCGCTGGGGGCACAGGGCTTTGAATCAGGGTAGTATCCTGCCTTCCCTCCCCTGACCCCACATGGTCTCAGGGCCCCCTTAGGGCCCCCTACCCCACTGATAGCTTCCTCCTTCTCTGGCACAAGGGGAGCCCCAGGGCTTGGGGGAGGGCGTAAGGTGGGGGGAAATGCCACTGCTTTTAGCAAAAGCCTCCCTCCCAGAATTAGCCAGCTTGCCTCCTGCACCCCACCCCCACCAACCAGGGGAGCCACTAAGCTGACTAACAACTGTCCCCTCACCCACCAGCTATTTCCCCAGGGTAGAGTGGGCAATTCTCACCTTCAAAGAGTCCCCGCCTGCCCAGGCCTTTGGCACAGAGGCTGAGTGGACAGTCAGGAGAGAGGCGAGAGGCAAGGCGAAGCCTGTGTCCCTGTTTCAGTTGCACTGGGGTTGGAGCCCAGGGTAGGGGTTTCCAGCTTCCCCAGGCTCCGGCCTTGTCAGTCTCTTTGCATGTGTGGATTTTTCTGTGTGTGTTTCTGTTTGGGTTTTTGTTGTTGGGTTTTTTTTTTTTTTTTAATAAAGAAAAGAAGATGTGTATATTTTTGGCAACGACAGAAACGTAGTGCAGATATATTTTTGCCTGTGCTGCTCAACTGTTTTTTTTTTCTGATACTGAAAATAATATTAATATTCCTGTTGATAAGACTTTGTAAGATGTTAGGGAGCTGATAATGGAGGGGGGTGGGAATCCTTCAAAGGCAATTTCTTAGGCACTTGCAAGGGCTTGGGGGAGGGGGAGGCAGTTGTGATGACCTCAGAAATACTCACTTTTTATTAATGCTAAATATGTTAGAAAGAAATGATAGCATTCAGCATTTTATTCTTCTTAATCTATTAAGCTGTGTAACTCCCTGCCCCAAACCACTGAAAAGAAAAGTAACCTTCAGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCGGGCGGATCACTTAAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTATCAAAAATTAGCCGGGCATGGTGGCACGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCACGAGAATTGCTTGAACCCAGGAGGCTGAGGCTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGTGTGAGAGAGTGAGACTCTGTCTCAAAAGAGAAAAAAAAAGAAAAGTAACCTTCAGAGATTCTTAGAAGAGTTGCTCATTCACACCCACGCCCTTGCCCAAGGCTGGCCCACTTAGAGCGAAACTTAACTTTTGTCTGGATGGGAAGAGAAGTAAGTCTACCCCGAGGTTGCCATGTTGAAGAGTGAGAGGTCCAAGTGATTCTGTGCATTGAAACCAAGACACCCCACCCAGAACACTTCTTCCCTCCCTCAGCCCAAACCAAAGGCTGGGGTTCTCATCTCCAAGTGGCTGTTCTCCAACTTTCCCAAGCCGCTTGCATTCCCCAGACTGGACTACTGTGGCGGTTAGGTTAGATTTGAAGACGGGGCCCAGGCTGGGTATGAACGGGTGCAGCCCTCTTCTCCTCTTCCCCCCCACATCTCTCATGAGAGAGGTAGTGGCATTTCCTTCTCAGGGAGCTTCAATGGGAAAGGTCTCGAAAGCTTCAGGAGGAGCAGAATACCAACGCAGGGGGATGGCTGTAACGATCTCACCGTCTCCTAACCTCAGTCCCTTTTTTGAGAGTGAATGGTGGAGGGTGGGAAGGGACCCAGATTTGTAGATCTCTTTGTCTGGGGGAGGGGAAGGATGTGGTTTGCAGAGCGGAAGCAGAGTTTGGAAACGCATGAGAGCAGAGCTTCGTGTGTTCCCACCCTCAGTGAGGAGGTGTGAGTGGGTGAGCATGTGGAGTTGGGTGTTCCCACCCTCAGTGAGGAGGTGTGAGTGGGGGTGCATATAGAGGCAGTGCCTGCTGTGGGGTCACAACTGGTGCATGCCAGCGCCAAAGGGACCTGTCTTTAGGGGTCATTTCAGCCAGCTCCTCCCATCACAGATGACAGCTCCAAGCCTAGAAGGGGCTCAGTGACAGGGCCAGGACAAGCCCTCAGGACTGTGGCCTCCTGGCCCTTGGTTCCCCTGCCCCACAACATGGTCTCCACATGGCTGGCTGGCTGGCTGTCCCTGTGTGTGTGTGACACACGGTGTGAGTGCAGGGCTGTGCCCGGGGTGGGAGGGTGTCTATGTGGCACTGACTGTCTTAGCTCAGAGCTGGTGGATCCTCTCCATGGACAATGACACTTTAAGGATTGTCTTGGTTTGTTTTTCCTATTTGTGGGGTATTTTCCCCCTCAGGCTCCTGGGTCTGCTGCTGCCTCAAGGTGTCCTGACCTTGAGGCTGATGAGGGGACCCCTGCCTGTTTCCCCCATACTGAGTTCTAGGGAGGTGCTCACCCCAGACTCTTAGGAAGGGTCTAGAGAAATGAGAGGAGCCCAAGCCAGGGGCCAGCTCCGAGAAAGGGTAACCTCCACGCTTCTCTCTCCCAAATTGGAAATGAAGACAGGTTTTCAAAGGCACAGGCTCCCCCTGCCAGCTTCTAGGATCTTCCTTGGTGTGCAATGGGCCAGTTAGGGGTAGGCAGCTTGCACCCAGTTCTCCTTTATCTCAACTTATTTTCCTGGGGAGAGGTGCCTAGAGGGATTGAGGTAACTTCAACTGGGAATTCCAAGGAAGGTGGGCAAGTAGCCTTGGCTCTCTCCCACCATGTCCATCAGGATTGAGAGTGTGTCTAGCTCCCGACCACTTTGTCTTGACCTACTGAAAAGTTGGGAACTGAGGGGTGCCTTCATTCCCCTTTGTTCACTTTCTCCAGCTCAACTTGGGACTTGGGTGGTGGGACTGGAGACCTCACCCCTGCTCCCGTCCCGCCCCCTTTCTATCCCAACCTGTTTCCATGTAGCAGACCCTTCCTAGGGAGCAGGGAGGGGAAGCCACAGATTGCAAACCCAGGGGCTCCTTTTTCATTCTTTCTAAAACCTTGATATCCTCAGCCCAAAGGCGATGCCCCCCTGCCACCTCCAAGCCTGGAATTGTGCATAACCCGGATCTTGTATCTTTGTATAACGGATGTTATTTGTACGAAGGGCAGTTCGTAAACAGCACTTGTTCTTTTAATAAAAGAATGTTTTGCAAAAAAAAAAAAAAAAATCCGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108292-MLLT6:NM_005937:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.445 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACACAAGTCTCATGGCCG
R:
CCCTCTCAGTCTCAGTCCTCG
Band lengths:
356-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)