BtaINT0093716 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011532 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr19:39956102-39956916:+
Coord C1 exon
chr19:39956102-39956458
Coord A exon
chr19:39956459-39956874
Coord C2 exon
chr19:39956875-39956916
Length
416 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTCCCTTCCTCTTTTTCCAGACT
3' ss Score
10.79
Exon sequences
Seq C1 exon
GAACACCAGACTGTTGTCTACCAGATGATCCAGCAGATCCAGCAGAAGCGGGAGCTGCAGCGGCTGCAGATGGCCGGGGGCTCCCAGCTGCCCATGGCCAGCCTGCTGGCCGGAAGCTCCACCCCACTGTTGTCCGCGGGCACCCCTGGCCTGCTGCCCACAGCATCTGCCCCACCTCTGCTGCCCGCCGGAGCCCTGGTGGCGCCCTCGCTCGGCAACAACACGAGTCTCATGGCTGCAGCAGCTGCGGCCGCAGCAGTAGCAGCAGCAGGCGGGCCTCCAGTCCTCACTGCCCAGACTAACCCTTTCCTCAGCCTGTCAGGGGCGGACGGCAGTGCCAGTGGCCCCAAAGGAGGG
Seq A exon
GTGAGTAAGGGGTCTGGTTTAGGGGAGGAGCTGGGAATGGGGCAGAGGGACCGTCCTGTCTCCCTTCTCCTGGAGAGGCCCATTAGAAAAGGCTGTTTCCTCTTTGATTGGACCATTTAGAAAAAGATGATGCTCTGGGTGAGCCATTTCAAGAAAGGCATCCCTCCTTCTGAGGGCAAAGAGCCAGAGCCCGGGAGGCCCTTGGCTGGCACATGCCTACTTAACTGGGCGCCCTATGCAGGGCAACTCTCCCAACAGACACACAGATACACGGAAGTTGACCCTGTTGTGCAGCCGTCAAAGCCCAGCCCTTTATTGCACCCAACATCAGCTTTCTTGACCCAGGAAGCTATTCTCAACCGGGTGATTGGACCAGATACCTCCCCAATCCCCAGTCTCCCTTCCTCTTTTTCCAG
Seq C2 exon
ACTGCTGACAAAGGAGCCTCAGCCAACCAGGAAAAAGGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011532:ENSBTAT00000015325:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAGATCCAGCAGAAGC
R:
CTGAGGCTCCTTTGTCAGCAG
Band lengths:
350-766
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development