GgaINT0143434 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:3911731-3912634:+
Coord C1 exon
chr27:3911731-3911895
Coord A exon
chr27:3911896-3912589
Coord C2 exon
chr27:3912590-3912634
Length
694 bp
Sequences
Splice sites
5' ss Seq
ACGGTGCGT
5' ss Score
10.25
3' ss Seq
GTTCTGTTCTGTTTTTAAAGAGC
3' ss Score
6.1
Exon sequences
Seq C1 exon
CTCAACCCTAGCAATGCCCTCCTGGCTCCACCACAGGCCACCCCACCGCTCAGCGCTCCTGGGAGCAGCCTCATGGCTTCGGGGACAGGCATCCCTCCCGTCCTCACAGCACAGACTAACCCGTTTCTCAACCTGCAGGCTGATGGCAACACCCCGAAAGGAACG
Seq A exon
GTGCGTATGCTGCTAGCGCTCCCCTAACCCCACTGAGCTCCTGGTGCCGGGCACCGTGCGCCGTGCACTGCACTTAATGGGGGAGAACCAGGGCACCGCGTGGGCAGCAGAGCCAGGGCGCTCCGCTGGCTTTGCGCCCCCCCCCGAGTAGCCAATGTCACATCCTGACAGACCTCCAAGGACTTCTGTAGGCCCAGGCAGGGCCGTAGGTAGGCACAGAGGCTCCCAGGGCATCCTTCCTAAGACGTGGATGGGCAGCGTGCCCTTTGCAGTGCCGGCCCTGGTGATGAAACGCGGAGGTGACTGCATGCTGAGACCCGGGGTTTAGAAAGAAGGAATCTTGCACCCAAGAGGAGAGGTCTGCAGCCTCTCTGTAAAGCATCCTTGTACTGCAACACCAGCATCGAGGGATGGGGCGATACTTTGGCAATTCCTCCGTCCCTCCCTTGGCCTGTGTTTGTACCCAGAAGGTCCAGCCCTGGTTGGAGTCGCTTAGGAGCAGGCAGAGGGGAAGCCTAGGGCTCCCTGGTGCGTCCTGTTGCTCTTGGTGGAGCCTGAGAGGTGGCAGTGAGCAGGGCCAGGTTGGCAGCACAGCAGAGCTCTCTGTTTCTGCCCCTCCGGTACTGATACCTGTCTCCTCTGCGTTTCTCTTTCTGTTTGTTTTGTTTTGTTTTGTTCTGTTCTGTTTTTAAAG
Seq C2 exon
AGCATGAATGAAAAGGGAGCTCCTCTTACCCAAGACAAGGGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACCCTAGCAATGCCCTC
R:
GCCCTTGTCTTGGGTAAGAGG
Band lengths:
207-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]