RnoINT0092954 @ rn6
Intron Retention
Gene
ENSRNOG00000053285 | Mllt6
Description
MLLT6, PHD finger containing [Source:RGD Symbol;Acc:1306689]
Coordinates
chr10:85622983-85625854:+
Coord C1 exon
chr10:85622983-85623339
Coord A exon
chr10:85623340-85624351
Coord C2 exon
chr10:85624352-85625854
Length
1012 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTTTTCTCCTGTCTTTCCAGACT
3' ss Score
10.82
Exon sequences
Seq C1 exon
GAGCACCAGACTGTGGTCTACCAGATGATCCAGCAGATTCAGCAGAAACGGGAGCTGCAGCGGCTGCAGATGGCTGGGGGCTCTCAGCTACCCATGGCCAGCCTACTGGCCGGAAGCTCCACCCCACTGCTGTCCGCGGGCACCCCTGGCCTGCTGCCCACAGCATCAGCCCCACCCCTGCTGCCTGCTGGAGCCCTGGTGGCCCCTTCACTGGGCAGCAATACAAGTCTCATGGCTGCAGCGGCTGCGGCCGCAGCAGTGGCAGCGGCAGGCGGACCTCCAGTCCTCACTGCTCAGACCAACCCCTTCCTCAGCCTGCCCGGGGCGGATGCCAGTGGGAATGGCTCCAAAGGAGGG
Seq A exon
GTGAGTACGGGACCTGGACCTCCTATATATTCCTATGGGACAAGCAGAGGGGGATGGTTATAGCAACGTCATCAAATAGGTCTCCAGTGGGAGGCAGCAACCTCTAGGTCAACCAGGCAGCCTGCTGTAGACAGCAGGACGCTGCCCTCATTGGTGTTACCTGAGAGGAGATAAAGGGCTACTTAGAAAACAGCCCTTCAGCCTAGTGACAGCCTAGTGTGTTAAAAAGGAAAGAAAAGAAAAAAGGGTGTTTGCTGCCAATCCCAGTGACCTCAGTTTCACCCCAGGGACCCATGTAGTGGAGAGAGAACTGGTCCAGAAAACTGTCCTCTGTCATCCATCCACACATGCATGTACACGCACACGCACACACACATATACTGAGGAAGTACATTTTTTTTAAAAGATTTATTCATTTATTATATATAAGTACACTGTAGCTGTTTTCAGACCCACCAGAAGAGGGCATCGGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCGGTGCTCTTAACCAATGAACCATCTCTCCAGCCCGAGGAAGTACATTTTTTGTTTTAAATTCTTTTTTAAAAAAGAGAACAGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAATGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAAATAATAAAAAAAAAATAAAAAAGAGAACAGCCTTTTATGGGAGGAGTAAGTAGGAAGGACGTTTCTGTGCACAACAGTTAGAGAACGATGACCTTCTGCATGGGCTGACAGAAGAAAAGGCCTTGGAGGGCCCACCTGGACCAAGAATCCAGCTTTTGGCACCTCCTCTCTTCACAGACTACGCCCGAGGCAGCAGCATCTTCTGCTCCTACATCAGCCTTTTCCACCCTTGAAAGCTGTTCCTAACAGGGTATTAGGGCAAGATGCTGCCAACACTAAAGCCTTTTCTCCTGTCTTTCCAG
Seq C2 exon
ACTGCTGACAAAGGAGCCTCAGCCAGCCAGGAAAAAGGCTAACTCGACCCTGCCCCTCCTGACCCCTACATGGCTCGAGGGTCCTTGCCTGGAGTGGGCAGCTGGGTCCAGACTCTGGAGAGCCGGGCCCAGAGCCTGTGTGGATCTCCAGGGAGTTGTGCCTGGAGTTCCAGGTGCTGAGGAGAGAGACGACCGGAGAGGAGCCCTTCCACCAGGCCCACCCCCTCACTGCACTGGCTGCTCAGAGAGGATCAGGGGAGGACAGGTTCCTAGCCTGCCTAGGAGAGCCTCCATCCTCCACAGATGCCTAGGGGCCCCCAAAGAGCAAAGTAGGTCTGGTATAAGACGTGGAGGGATGGTTGGACCTACCACATAAACGAATCAGCACTTGAATGGGGAAAGTGAAGGGTGGGCCCCTGGGCCCATCCCTGTGTGGAAATTCCTTATGGAAAAAGGGCTGGTCCCACCTGACCTCCAGTTTCTTCCCAGCAGAAGGGATGTATCCCTTTGACTGTTTCTTATCATCCCTCCCAGCTGAGGGTCTCAAGCTGAGCTTGGAAAAGCCTACAGATGTGGTGGGGCTGAGGAAGGGCAGGAGAGCACCTCTTGGGGCCCCATGATGGGGCCAGGCGGGGAAGTCCTTTGCTGTCCTGCCCCTTTTTGCACTATTGGCTTAAGGAGTGCCGAGGGTGGGGAGAGGGAGCTGCCTGACTCCACAGATCGTGAGTGTGTGTGAGTGTGTGAGTGTGTGAGAGAGATGGTCAGTCTGTTTAACCTGTCTGTCAATTCTTCCTCTGGACCTGGGGCAGCCAAGGGCAAGAGTGGGAGCAACGGCCAGTACTGGAGCAGGAGCTCCTAGCTCTTGTACCCTCTACCCCCTCACTAACTCTGGTCCTTTTCCAGGGCATGAGTGGTTAACTTATAAAAAAGAAAAAGAAAAAAGAAAAAAAAACAAACAAACAAAAAAATAAAACAGACCAGTACTCCAGTATTGGAGAATTCCTAGGGGCTGGGGCTCTGAATCAGGGTAATGTCCTACCTTCCCTCCTCTGGACCCCACTCCATCTCAGGGCCCCCTCAGGGCCTCCTCCCCCACTGTTAGTTTGATCGGTCCTGGCACTAGAGCATAGGGGAGGGGTAAAGTGCCACTTCTTTTTTTTTTTTTTTCTGCAAAAGTCTCCCTCTCCAAAGTAGCTAGCCTGCCTCTTGAATCCTTTCACCAGCTAGTAGAGCCACTTAAGCTAACAGCTGTCCCCTTCACCCACCAGCTATTCTCCAGGGTGTAGTAATAGGCAGCAGAGACTTTCTGCCCAGGGCAGTAATGAAAAAAAACGTTGAGTGGGACACGGAGCACTGCTACGGAAGCCTGTGTCCCTTTTGGTTGCACTGGCTGGGACTGAGGGTCAGTTCCAGTTCCCTTTGCTCATGTCTGTGTGTCTCTCTGCATGTGTGCATTTTGGTGTGTTTATGTTTGCATTTTGTTGTTGGGGTTTTCCAGTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053285:ENSRNOT00000092122:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAGCAGAAACGGGAGCTG
R:
CTGAGGCTCCTTTGTCAGCAG
Band lengths:
343-1355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]