MmuINT0099398 @ mm10
Intron Retention
Gene
ENSMUSG00000038437 | Mllt6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:MGI Symbol;Acc:MGI:1935145]
Coordinates
chr11:97680470-97685463:+
Coord C1 exon
chr11:97680470-97680826
Coord A exon
chr11:97680827-97681545
Coord C2 exon
chr11:97681546-97685463
Length
719 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTTTCTTCCTGTCTTTCCAGACC
3' ss Score
12.16
Exon sequences
Seq C1 exon
GAGCACCAGACTGTGGTCTACCAGATGATCCAGCAGATGCAGCAGAAACGGGAGCTGCAGCGGCTACAGATGGCTGGGGGCTCTCAGCTGCCCATGGCCAGTCTACTGGCTGGAAGCTCCACCCCACTGCTGTCCGCGGGCACCCCTGGCCTGCTGCCCACAGCATCAGCCCCACCCCTGCTGCCTGCTGGAGCCCTGGTGGCCCCTTCACTGGGCAGCAATACAAGTCTAATGGCTGCAGCGGCTGCAGCCGCAGCGGTGGCGGCGGCAGGCGGACCTCCAGTCCTCACTGCTCAGACCAACCCTTTTCTCAGCCTGCCTGGGGCAGACGCCAGTGGGAATGGCCCCAAAGGAGGG
Seq A exon
GTGAGTAAGGGACCCGGGCCTTCCTATATTCCTATGGGACAGGCAGAGGAGGATGGCTATAGCAGCAGCAGCTATGTCTCTAGTGGGAGGCTAGCTATATCCCTAGGTCAGCATGGTGGCCTGCTGCAGACAGCAGGACCTCAGCTCCTGTTGGTGTCCCCCTAGAGGAGAGGAAGGCCACTGAGCAGGTTCCAGTAAAAAAAGGACCACTTAGAAACCAGCTTTCCAGCTGGTGACAGCCCAGTGTGTTAAAGAAGGAGAAAGGTGTTTGCTACCAAGGCCGATGACCCGAGTTTCATCCAGGGACCCGTGTAGTGGAGAGAGAACTGATCAGAAAACTGTCCTCTGCCATCCACACGTGCACACACACACTAAAGAAATATATATATATATATATATATATATATATATAATATCTTGTTTTAAATTCTTTTTAAAAAAGAAAACAGCCTTCTGTTAGAGGAGTAATTAGAAAGGACACTTCTGTGTACAACAGTTAGAGAGAGGGGACCCTCTGCATGGACTGACAGAAGAAAAGGCCTTCCTTGAAGGGCCCGCCTGGGCCCAAGAATCCAGCTTTTGGCACAGGCTAGACAGCTCACTCCGCAGGCTTGACCACTCAGCTTCTTCATCAGCCTTTTCCACTCTGAGAGCTTTTCCTAACTGGATATTAGGGCAAGATGACTACAACACTAAAGCCTTTCTTCCTGTCTTTCCAG
Seq C2 exon
ACCGCTGACAAAGGAGCCTCAACCAGCCAGGAAAAAGGCTAACTCCATCTGCCCCTACCTACCCCTACATGGCTTGAGGGTCCTTGTCTGGAGTGGGCAACTGGGCCCAGACTCTGGAAAGCCAGGCCCAGGGCCTGTGCTGATCCCCAGGGAGTGCATGCCTGGCGTTCCAGGTGCACATGGAGGAGAGAGACTGGAGGGAGCCCTTCACCTGGCCCACCCCTCACTGCACTGGCTGCTTCAGAGGGTCGGGAGGACAGGCTCCTAGCCTGCCTAGGAGACCCCATCCTCCGCAGATGCCTAGGGGCCCCCAAAGAGCAAAGTAGGTCTCAGCATGAGAGATGGAGGGTTGGTTGGACCTACCACATAAACCAATCAGCACTTGAATGGGGAAGGTGGAAGAAGGGTGGACCCCCAGGCCTATCCCTGTGTGGAAATTTCTTACGGAGAAAGGGCTGGGCCCACCTGACCTTCCGTTTCTTCCCAGCAGAAGGGATCCATCCCTTTGACTGTTTCTTATCATCCCTTCCCACTGAGGGTCACAAGCTGAGCTTGGAAAAGCCTACAGATGTGGGGGGCTGAGGAAGGGCAGGACAGCACTTCTTGGGGCCCCATGATGGGGCTGGCTGGGGACGTCCCGTGCTGACCTGGGTGCCCTGCCCCTTTTTGCACTATTGGCTTGAGGAGTGCCGAGGGTGGGGAGAGGGGGCTGCCTGACTCCACAGATTGTGAGTGTGTGAGTGTGTGTGTGAGTGAGAGAAAAAGAGAGAGATGGTTAGTCTGTTTAACCTGTCTGTCTATCTGTCATTTCTTCCTCTGGACCTGGGGCAGCCAAGGGCAAGGACAGGAGCAGTGGCCAGTACTGGGGCAGTGGCCAGTACCGGGGCAGTGGCCAGTACCAGGGCAGGAGCTCCTAGCTCTTGCATCCTCTACCCCCTCACCAACTCTGCTCCTTTTCCAGGGCATGAATGGTTAACTTATAAAAAACATAAAACAAACAACAGACCAGTACCTCCAGTATTGGAGAATTCCTAGGGGCTGGGGGCTCTGAATCAGGGTAATACCCTACCTTCCCTCCCCTCTACCCCACCTCAGGGCCCCTCAGGGCCTCCTCCCCCACTGTTAGTTTGATCAGTCCTGGCACAAGAGAGTAGGGGAGGGGTAAAGTGCCACTTCTTTTTAGCAAAAGTCTCCCTCTCCGAAGTAGCTAGCCTGCCTCTTGAATCCTTTCACCAGCTAGTAGAGCCACTTAAGCTAACAACCACCCCTTACCCCACCAGCTATTTTCCAGGGTGTAGTAATAAGTGGCAGAGACTTTCTGCCCAGGGCGGTAATGAAAAACGTTGAGTGGGACACGGAGCACCGCCAAGGAGGCCTTGTGTCCCTTTTGGTTGCACTGGCTGGGACTGAGGGTCAGTTCCAGTTTCCCTTGCTCATGTCTGTGGGTCTCTGCATGTGTGCATTTTGGTGTGTTTACGTTTGAGTTTTGTTGTTGGGGGTTTTTTTTGTTGTTGTTGTTTTTTTTTTTTTTTGCTTGTTTGTTTTGGTTTTTTTTTTTTTTTAATAAAGAAAAGGTGTATATTTTTGGCAAGGACAGAAACGTAGTACAGATATATTTTTGCCTGTGCTGCTCAACTGTTGTCCCTCACTCCCACCCCCCATGATCTGGGAAATACTATTCCTGTTGATAAGACAGGAATAAGATAGGATAAGATAGGATGGGCCGGGACCCTTCAGAGGCAACCCTTTGACACTTGGAAGGACTTTGGGGGACAGTTGAGATGACCTCAGAAATACTTTTCTAACTGCTATTACTAGAAAGACATCTTCATCTCTTCCGCTCTTGTAGACCTCCTTGTCTACGAGCCAGTGATTCTTCAGATTCGTCTACGACCTTTTTATCCAGGCCCACACCCTTGCCCCACGCAGAGCCAAGTACCCTGCATTGTGGCGCAGGGGTGCTCGGGGCTCTGGAACTCTGTTCTCAGCAGTTCCCTGGGCTCCTTTCCCTGTTCTGGGCCAGGCAGGATGCCCTAACAGAGTCAGGTCAGGCTTGCAGAGGCCTCTGGGCTGGATGGTTTGGTGTTGGCTCCTCTTTTTTGGGGGTGGGGTGGGGTGGGGAGGCGTTTTTCGAGACAGGGTTTTCTCTGTGTAGCCCTGGCTGACTTAGAACTGGCTGTGTAGACCAGGCTGGCCTCAGACTCAGATCTGCCTGCCTCTGCCTCCAGAGTGCTGGGATTAGAGGCGAGCTGGTGGTGCTATTCCATATCCTGAGACATGAGGAGAGGTGTGGCCTGGTGCCGCAGCACAGGGAGAATTAGGGTCCTTGGGAGGGACCAGGGTTCTGCAAAATGGCTCTGATGACCTCACCTTTTTTTTTTTTAAAGACAAGGTCCCAAGTGCTGGGGTTAAAGGCGTGCGCTACCACGCCCGGCACAAGGTCTACTCTTAATGTAGCTTTGGTCGTCCTGGAACTTGCTATGTAGACCAGGCTGGCCTCAGCCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCACTATGTCTGGCTTTGGTCCATTTTTTTTGATAAAGAGCTTGGTAGAAGGAGAGAAAGGATGCAGATTTGGGGCCATCTCTATCTGGGAGGGGGAGGATGTGGTTTGCAGAGCGGAAGTGGAGTCTCAGAATGCATGAGTGGATCTTAATGTCACCACCCTAAGTGAGAAGAGGTGAGCGGGTGACAGATGCTGAGCCTGTGCCCACCAGGGCAGGGGTGGCTGGGTCATGGCTGATGGATGCTGATCAGGGGGTCATTGGAGCTGGCTTTACAGGCTACTGCTCTAAACCTAGGAGTGACGTGACCTCAGCAACAGCAGTGACAAGCCTTTGTACCTGGCCTTCTGGTCATAACTGCCTGACTGTCAAGCCTTTTAGCTGCAGCTGGTTGGCTGGCTGTCCCTGTGTGTGTGGTGAGTGTGGTGGTGTGAGTGTAGTAGGGTTGTGCCCGTGGCGGGAAGGTATCTATGTAGCACTGACTGTCTTAGCTCTGAGCTGACGAATCCTCCACAGACAATGACACTTTAAGGGTTGCCTTTAAGAGAAGAAATAAATTGTATGTCCCATCCCCCTCTCCCTCATCCCCCAGCTTGTGGGTGTCCCTCTCAAGCTCCTGGGTCTACTGCTGGTGATCCCTTCCCTTCCTTGTGTGAAGACCCAGGGAGTTCCCACCCTAGACTCCTAGGAAGGGCCTAGACAAATGAGAGCCCAAAGAGGCTACCAGTTCCATTTCCTCTTCCCACCCTGGAAATGCTGACCTGTTTTCAGAGACACAGGCCCGCCCTGCTAGTCTCAGTCATCCCAAGAGTGCAGAGGGCCAAAGGGAGTAACAGACTGCTGGTGCCTGGGGAGAGGTGCCCACTAGGACAGAGGGAGGTGGGGCCAGGGAGAGGTGCCCGCTAGGACGGAGGGAGGTGGGGTCAGGGAGTCCCTCTGTTCCCTCCAGCCGCTTCCTCCTGGATTACAGGTGTGTCTAGTTCCCAGCAGACCACCTTGTCTTGACCTACTGAAGCGTTGGGGACTGAGGACCGTCCTCTTTCTCCTGTGTTCACTTTCTCCAGCCCCACTTGGGACTGAAGACCCGAAGGACTGTGGCTCCCTTCCTTCCATCCCAGCCTGTTTCCATGTAGCAGACCCTTCCTAAGGGAGCAAGGAAGGGAAGCCACAGATTGCAAACCCAGGGGCTCATTTTTCATTCTTTCTGAAACCTTTATATCCTCAGCCCAAGAGACGGTGTTCCCCTGCGACCTCCAAGCCTGGAATTGTGCATAGCCTGGGTCTTGTATCTTTGTATAACGGATGTTATTTGTACGAAGGGCAGTTCGTAAACAGCACTTGTTCTTTTAATAAAAGAATGTTTTACTAAAAAAAGAAAATCCAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038437:ENSMUST00000044730:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.563 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTACTGGCTGGAAGCTCC
R:
GACAAGGACCCTCAAGCCATG
Band lengths:
346-1065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types