GgaINT0143434 @ galGal4
Intron Retention
Gene
ENSGALG00000001574 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr27:4002129-4005910:+
Coord C1 exon
chr27:4002129-4002512
Coord A exon
chr27:4002513-4003206
Coord C2 exon
chr27:4003207-4005910
Length
694 bp
Sequences
Splice sites
5' ss Seq
ACGGTGCGT
5' ss Score
10.25
3' ss Seq
GTTCTGTTCTGTTTTTAAAGAGC
3' ss Score
6.1
Exon sequences
Seq C1 exon
GAGCAGCAGGCCCTGGTGTTCCAGATGATGCAGCAGATCCAGCAGAAGAGGGAGCTGCAGCGGCTGCAGATGACGAGCTCATCCCAGCTGTCCATGAGCAGCCTCCTGGCAGCCACCTCCACCCCCCTCCTGCACTCCAGCACCAGCGCCCCGATGACCTCGGCCCCCCAGCCGCCCCCCAACAGCAGCTCCCTCATGGCCTCCCTCTCCCCCCAGCAGCTCAACCCTAGCAATGCCCTCCTGGCTCCACCACAGGCCACCCCACCGCTCAGCGCTCCTGGGAGCAGCCTCATGGCTTCGGGGACAGGCATCCCTCCCGTCCTCACAGCACAGACTAACCCGTTTCTCAACCTGCAGGCTGATGGCAACACCCCGAAAGGAACG
Seq A exon
GTGCGTATGCTGCTAGCGCTCCCCTAACCCCACTGAGCTCCTGGTGCCGGGCACCGTGCGCCGTGCACTGCACTTAATGGGGGAGAACCAGGGCACCGCGTGGGCAGCAGAGCCAGGGCGCTCCGCTGGCTTTGCGCCCCCCCCCGAGTAGCCAATGTCACATCCTGACAGACCTCCAAGGACTTCTGTAGGCCCAGGCAGGGCCGTAGGTAGGCACAGAGGCTCCCAGGGCATCCTTCCTAAGACGTGGATGGGCAGCGTGCCCTTTGCAGTGCCGGCCCTGGTGATGAAACGCGGAGGTGACTGCATGCTGAGACCCGGGGTTTAGAAAGAAGGAATCTTGCACCCAAGAGGAGAGGTCTGCAGCCTCTCTGTAAAGCATCCTTGTACTGCAACACCAGCATCGAGGGATGGGGCGATACTTTGGCAATTCCTCCGTCCCTCCCTTGGCCTGTGTTTGTACCCAGAAGGTCCAGCCCTGGTTGGAGTCGCTTAGGAGCAGGCAGAGGGGAAGCCTAGGGCTCCCTGGTGCGTCCTGTTGCTCTTGGTGGAGCCTGAGAGGTGGCAGTGAGCAGGGCCAGGTTGGCAGCACAGCAGAGCTCTCTGTTTCTGCCCCTCCGGTACTGATACCTGTCTCCTCTGCGTTTCTCTTTCTGTTTGTTTTGTTTTGTTTTGTTCTGTTCTGTTTTTAAAG
Seq C2 exon
AGCATGAATGAAAAGGGAGCTCCTCTTACCCAAGACAAGGGCTAAGCTCCCTCTCACCCTGAACAAACCAGCAGCCAACTCCTCTCAGCCAGGGGGAAAGTGGCTTTCCACAGTCAGCAGCTTTGGTACTGTTAGAGCAATGAGCACAAGGCTTCCGAGAAGCATTTCCTGCCGCTGGGCAATGCCAAGAGGTGCTTTGGAAGACAGTCCGTCTCCGACCAAGCCCTGCTATCAGGAGGAGCAAAGGTGGGGGGCAGCTTGCCAGGCTGCTCCGTGCCCCACGTGCTCAGAGCGAAGCTGTGTTTCCAGACAGAGTAGAGGAGAGTTAACGCCACGTGCCACCATCTGCTCCCCGCCGTGAGCACAAAGCGCGTTGTTCCGTGCGTGCACTGAGAGCACGGAGCATCCTCAGCCAGGAGCTTGGTGGAGGGGGGGGGGCACCCCCTGCTGAGGACACTGCTGTGCAGTGCAGAGGGACGTGGAGGTGCCCTCGGAGGCAGCGCTGGATGTGACCCACGTGGGGATGCTGCGGTGGTACCTACGTGGTGTGCTCCCCCTTGCTGGGGAGGCGAAGAAGATCCATAGCTGAGATTTCTCACCTGCTGGGCTCTTTGGATGCTCTTTGTAGCCATCGTACGACGCTCCCTACACCTCAGCTGGACGCAGCCCCAGCCTGGAGGACATGGGTGGTGGGGTGATGGGTGAGGAGTGGTGCTTGGAGAGCTGCAAGCTGCTGCTGCTGCTGTAAAGGACGCGGCCACGTCTGCTCTGCCAGCTGCTGGTGGGTCGGTGCTGTGCTTGGGGCATGAAAAGCACATTCCTGTTCCTCGTGCTGCCTCTCTTTCCTTCCAAGATGCCCAAAGGCCGATGTTCAGCTTGCAGAGAGGGGCTGTGGTCGGTTGTTACCCCATAGCAGCCAACTCCTGAAGGAGCATTTGAAGAGCCTGGCTCTTACATCCCAACCCTCAGCTGGGTGGCAGAAAACGTGAGTGCATGGAAAAGACAGCCTCAGTCGTGGTGCATCATTTCCCCACCACAAATCCTTCCAGCCTGGCAAAAAATAGCCAAACCAACCCAAGAAGCAGCCGTTCTTCCATTGGTCTCAGGCACTGAGAGAGGGGATCTCCGAGCAGCGGGGCAGTCGCTGAGCTCCCACGTTGGGGCGTTGGACCCTTTTGTTCTCTTCCACCTTTTGACCTTAACTCCGTCTCACAGCCCGGAACCTCAGCGAGGAGCTTCTGCTTCTGAGCCTGGATGTCACGGGTGGCCGGCAGGGCAGGTGGGGCTGCTCTGAGGGAGGGGAGCATTACATCAAACGTACGCCTGCCCCTTCTTTTCCTCTTCCCAGCTCTTCTTGGGATGGGGGGGCAGGTGCAAAGACTCCAGCAAACAGCAGCTCCGAGGGTCTTAAAACGTCACACGTGGGCAGACCCGAAGCCTTTTCAGCACATTCCCACTGCCCCCTATCTGGTTTGCACTATTGGAATTTGTCAGCAGTGGGTCTGTGCTGATGGGAATAGGAGGCTGGTGGTGGGCAGATCTCATCCTTGACGTCTTTCTTCCTTTATTTCTTTGGTTTGGTTTCTTGTTTTCTCTTTGGGAAATGATGGCCCCGAGGGTTGGATAAAGCTAAAAACCAGAGGGAAGAGCTCCATTCTGCTCTCCCGTCCTGTGAGCCGGGCAGCACTCTGCCGTCTGCTCAGAAATACGCTCTGTATCATTTTGATTCTGTTCTCTAAAGGCAGGAAAGCTGATGTTTTAACAAGGCTGAGGAGCTGTGGGAAGGATGGGGATGGCAGCTAACGGTGAGAACACAAAGCAAAATAAAACCCGAGGACAAAAGGTGCCCCCTCCTCGTGGTCCTGCATGCAGCGCAGCCTCGGCGCGGAGCACCTCCTCCCCACTGCATCCATTGGGGTCCAACGGCAGCTGTGAGCTCTGCAGCTGCAACGCCTGCTGCTGCTGGGCTCACCTGTGGCTCCGATTCCATTCTGATGATGATGATTTTTCTCTTTTTTTCACTGGGAGGTCCCTATGGGGAGGTGCCACCTGCTGACCCGCTGCCCAGGCATGCGCAGGCTGCTGCAGAGCATGCCCACGTTCCAGCTCTGCAGGGAGAGCTGGGAGCAGGGAAGGAGAGGGGCTCCATCCGTGTGGCTCTGAGCAGAGCACGCAGCACCTGCAGCAAATCGAAGCCCTGCTTGGGCCCGTGGGTCAGCAGCCCAATGCTGAGCACCAGCAGGAACCCGTGGGGTCAGGAGAGGCTCATAGGGAAGGCGAGAGCCCTGCAGATAAAGCACTTAAACATTCCTCGGGGCTCTTTCAGAGGTGCCAGCCCTTCTCAGGGCACCCCCTGCACCCTGAGGTCCCTTTGGGCTATGGGGGGGGGGGGGCAGCGCCGAGCACCCACATGGCTGTGAAGAGAGGAGGAGGAGGAGGGAGAAGGAAAAGAAAAGCTAAAGATGATCTGTGTTTCAGTTGCACTGGGGTACGTTTCTTTACCCGTTTTGATGCTGATGTCTCATTTAGTACGTTGCATGTCTTTCTTTATTTTTTTTTTGTTTTGTTCTGTTTTTTTTTTTTTAATTAAATAAAAGAGAAAAAATGTGTATATTTTTGGCAATTTAAGGTAATGTAGCTAAGATATATTTTTTTCACGCTGCTTGACTGTTCTTTATTATAATAAATAATATTAATATTAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCGTTTCTCAACCTGCAG
R:
CTGGAAACACAGCTTCGCTCT
Band lengths:
357-1051
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]