HsaINT0105825 @ hg19
Intron Retention
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:7410]
Coordinates
chr14:105929830-105930484:+
Coord C1 exon
chr14:105929830-105929888
Coord A exon
chr14:105929889-105930368
Coord C2 exon
chr14:105930369-105930484
Length
480 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
CTCTCCTTTCCCTCTTTAAGTAA
3' ss Score
8.15
Exon sequences
Seq C1 exon
AAACGCTTGAAAGCAGCTGAAGCTGAGAGCAAGTTAAAGCAAGTTTATATTCCCAACTA
Seq A exon
GTAAGTGTGCCCTCACAGCCGTCGTCCTCGTGGCCCCGGGGGCCAGGGAGGGTGGGCACAGGGTGCTGGGGCCAGGCGGGTCCCAAGGAAACTCAAGCTCAGAGGCTGGGAAAGTTGGGGCAGCCCCCGGGAGGGCGGCCCAGGGCTGGGGGGTTCTGGCTGCAGACGCAGTGGCCATGTCTCTGTCGTCCTGGCCTCCTGGTCAGTAAGGGGGCATTGGGATTCCAGCCCACACCGCCAGGGTTCAGTCCCTGAGCTGGGCTCCATGCTAGGGGGAGCACGGGGGCCTGGAGAACGGCTCAGACCTCAGCAGTGGCTCCCAGGAACTGAAAGGGGAGAAAGGAAGATCCCTGCCGAGGCCGAGGGGTGCGAGGACGTGGTTCTGGACAAGGGGTGGTCAGCCGCGGTGCCTGCTGGGCACATGGGCCCTCGAGGTTTGTGCTCCTGCAACTCCTCTCGTCTCTCCTTTCCCTCTTTAAG
Seq C2 exon
TAACAAGCCAAATCCGAACCAAATCAGCGTCAACAACGTCAAGGCCGGTGTGGTGAACGGCACGGGGGCGCCGGGCCAGAGCCCTGGGGCTGGCCGGGCCTGCGAGAGCTGTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-MTA1:NM_004689:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.995
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)