MmuINT0101415 @ mm10
Intron Retention
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113130534-113131000:+
Coord C1 exon
chr12:113130534-113130592
Coord A exon
chr12:113130593-113130884
Coord C2 exon
chr12:113130885-113131000
Length
292 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
TGATCCCTCTCCTCCATCAGTAA
3' ss Score
5.89
Exon sequences
Seq C1 exon
AAACGCTTGAAAGCAGCTGAAGCTGAGAGCAAGTTAAAGCAGGTTTATATTCCCAACTA
Seq A exon
GTAAGTCCTATTTCATGTTCCTGGGGCGGGTCAGGGTGGGCGGTGGGTGTAGGACTCCAGGTTTGGCAGCCTCCAGAGTTGAGCTGAAGAACCTCTGCCACCCTTCTCATGAGCTTGCTCCACTGGGGAGGAGGGATCAGGATTTAAGCTTTTTTGGCTCAGGAGTTAATCTGGGTTTAGTGCTAAGCATTTTGGGCTATGGCAGCTGAAACACAGTGGACAGAGGAACAGGGATGTCTGTGGGGATCCAGACACCCCAGGGCACCTGTGACTGATCCCTCTCCTCCATCAG
Seq C2 exon
TAACAAGCCCAACCCAAACCAGATCAGCGCCAGCAGTGTCAAGGCCACTGTAGTGAATGGCACAGGGACACCAGGCCAGAGCCCCGGGGCCGGTCGGGCCTGCGAGAGCTGTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144:ENSMUST00000009099:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.983 A=NA C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGAGCAAGTTAAAGCAGG
R:
GTAACAGCTCTCGCAGGCC
Band lengths:
153-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types