RnoINT0094955 @ rn6
Intron Retention
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137942872-137943312:+
Coord C1 exon
chr6:137942872-137942930
Coord A exon
chr6:137942931-137943196
Coord C2 exon
chr6:137943197-137943312
Length
266 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
TGATCCTTCTCCTCCATCAGTAA
3' ss Score
5.85
Exon sequences
Seq C1 exon
AAACGTTTGAAAGCAGCTGAAGCAGAGAGCAAGTTAAAGCAGGTTTATATTCCCAACTA
Seq A exon
GTAAGTCCTACCTTTATATTCCTGGGGCCAGTGGAGGGTGGGAGGTGGGTGTGGGACACAGGCCAGGCGGCCTCCTGAGTGACCCTTTCATGAGCTTGCTCCACTGGGGAGGAGGGAGCAGGATTTAAACTTTTTTGGCCCAGGAGTCAAGCTGGGTTTAGTGCCGCATATTTTGGGATATGGCAGCCAGACTACAGTGGACCAGGGATATCTGTGGGGATACAGACACCCCAGGGCACCTGTGACTGATCCTTCTCCTCCATCAG
Seq C2 exon
TAACAAGCCAAACCCAAACCAGATCAGCGTCAACAGTGTCAAGGCCAGTGTAGTGAATGGCACAGGGACACCAGGCCAGAGCCCCGGGGCCGGTCGGGCCTGCGAGAGCTGTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711:ENSRNOT00000006521:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTTGAAAGCAGCTGAAGC
R:
GTAACAGCTCTCGCAGGCC
Band lengths:
172-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]