HsaINT0105825 @ hg38
Intron Retention
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105463493-105464147:+
Coord C1 exon
chr14:105463493-105463551
Coord A exon
chr14:105463552-105464031
Coord C2 exon
chr14:105464032-105464147
Length
480 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
CTCTCCTTTCCCTCTTTAAGTAA
3' ss Score
8.15
Exon sequences
Seq C1 exon
AAACGCTTGAAAGCAGCTGAAGCTGAGAGCAAGTTAAAGCAAGTTTATATTCCCAACTA
Seq A exon
GTAAGTGTGCCCTCACAGCCGTCGTCCTCGTGGCCCCGGGGGCCAGGGAGGGTGGGCACAGGGTGCTGGGGCCAGGCGGGTCCCAAGGAAACTCAAGCTCAGAGGCTGGGAAAGTTGGGGCAGCCCCCGGGAGGGCGGCCCAGGGCTGGGGGGTTCTGGCTGCAGACGCAGTGGCCATGTCTCTGTCGTCCTGGCCTCCTGGTCAGTAAGGGGGCATTGGGATTCCAGCCCACACCGCCAGGGTTCAGTCCCTGAGCTGGGCTCCATGCTAGGGGGAGCACGGGGGCCTGGAGAACGGCTCAGACCTCAGCAGTGGCTCCCAGGAACTGAAAGGGGAGAAAGGAAGATCCCTGCCGAGGCCGAGGGGTGCGAGGACGTGGTTCTGGACAAGGGGTGGTCAGCCGCGGTGCCTGCTGGGCACATGGGCCCTCGAGGTTTGTGCTCCTGCAACTCCTCTCGTCTCTCCTTTCCCTCTTTAAG
Seq C2 exon
TAACAAGCCAAATCCGAACCAAATCAGCGTCAACAACGTCAAGGCCGGTGTGGTGAACGGCACGGGGGCGCCGGGCCAGAGCCCTGGGGCTGGCCGGGCCTGCGAGAGCTGTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979:ENST00000331320:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.995
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development