HsaINT0105970 @ hg38
Intron Retention
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:29535]
Coordinates
chr1:93127232-93129448:+
Coord C1 exon
chr1:93127232-93127299
Coord A exon
chr1:93127300-93129277
Coord C2 exon
chr1:93129278-93129448
Length
1978 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TAATTTTTTTAAAAATTTAGGTT
3' ss Score
6.79
Exon sequences
Seq C1 exon
CTGGCAGACACACCAAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
Seq A exon
GTAAGTTGATTTATTTTATGTATCCCTATGAGGGAGACATTTAGTAAGTATAAGGAATAATGGCATTGTTTAAGAATTGTGGGATTGATGTACAGAAGAAGTCTATACCATTTTAAACTTTATAATGTCCTATTCTATTTTAGTTAGATTAAAGCAGTGATTCTCAAGGATTGGAGGAGGGAGGAGTAATCCTTCTCCTGGGAATGGTGGGTGGGAGACATATCGGTATCTCTGGGAGAATTTAGCCTGTTCCATTGAAAAAGCATATTCAGTAATAACTTCCTTCTATAATGTAATGTACTGAAAGTAAAATAAAATCTTGTTAGCTGGTGGGAATATTCAAAAGATAGAGAATATTGTAGGGAATACGGGTTTTTAAAAAGATTGAGATCTGTGGTTATAATAGTTAACACCATTAGTTACAGAAAATAATATTTCTAGCTGAGTAGTCTAAGATAATTAAGTGATATTATTTGATATATTCTCATACAGATCTACAGGTCTTCCCCCTACCTTATTTTTACTTTTTTTTTAACTCACCACTATACTAACAAGGATTCCCTTCTTTTTAAAACAATGTATCTACATTTCTTAGAAACATTTTTAAATGCAACAAATTTTATAAATGTATGTGTTGACTCCAGTGAAATTTTATATTATAAAATTTTTGTTGGCAATAAGTTGGTGTTTTGAAATTGATAGTATTTCTTCATTAAATAATGTAATTACCAGTGGCTGGATCTTTACACCAGCTCAAAAAGCCATGAGGTACCTGATATGACCTTGAAGTATAATAAAAAGGAAAAAAGACTGTAAAAAAGTCATAAGGTACCTGAGCAGTTATTGTGCTGGTAAAAATGTTTCATGGGACAGTGAATTCTGAATTTCAGTTTAGGGTACCAGAAATATATCTGTTCCTGTTATGGTAGTAATGAGGGATCCCCTTTCTTAAACCTGCAAAAAAGTAGAACATTTTGGTTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAAGCCGAGGCAGGCAGATCACCTGGGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATAGCCAGGCATGTTGGTGCACACCTGTATTCCCAGCTACTTAGGAGGCTGAAGCAGGAGAATCGCTTGAACCCGGGAGGTAGAAGTTGCAGTGAGCCGAATTGAGCCACTGCACTCTAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAATTAAAAAGAGAGGGAGAACATTCTAAACAACTGATGGAGGTTCTTGTGGCCAGGCAAGTTTCAGTAGAGCTGAGGTAGATGGAGTTGCTTGGGAATAAGGACCATAGAGACTAAAAGAAAGGTCTAAGGAGCATATTTTGCAGAGGCCCAAGTCCATAATAAACTGGAATAACCCTTCTTTGCCCCAGGTTATTTCCATTTCCAGATCCGGCACTCTAGATACTCCTTTTATTTTCTGGGCCTCTAGGATTTATCTCCTGCTTTCTTTTTCAATGCTGTCACCTATTATTTCTGACTAAGGTTTTTCTCTTTATAAATCCACTCTGAGATGGAATTCTTTTTTCCCTAAATCCCTTTTGAAATATTTCTAACAGATGACACTAAATATGGGAAAGCATATTGGGACCAAAAATATACCATTCTTTGTTCTTCTTTCTTCCTTTAAAAAGTTAGTTGCCATGTTTAAAAAGAAAAGTGGACATGTGCTCTTCTCCTTTCTGGTCCTATCCCTTCCTCCCCATCATATCCTACTGTAGACTGGCTCTGGGGCAGATAAAAATCAAGGAAAGCAAGGGGAAGTGAATTTTTGTAGTATTGGGTGGGCTTTCAAGTATAAGGGCCTTATATATGAAAGTTAAGTTAGGGTCTACTATGTATATGTGTTCAGTTTTTAAAATTTTAGTTAATTTTTTTAAAAATTTAG
Seq C2 exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCTGAAGGAACATCTCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTATATCTGATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033:ENST00000370298:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.569
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGACACACCAAAATCTG
R:
TTGAATCAGATATAGGTTTGGATGCC
Band lengths:
238-2216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development