BtaINT0095832 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001393 | MTF2
Description
Bos taurus metal response element binding transcription factor 2 (MTF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046556]
Coordinates
chr3:50496963-50498678:-
Coord C1 exon
chr3:50498611-50498678
Coord A exon
chr3:50497134-50498610
Coord C2 exon
chr3:50496963-50497133
Length
1477 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TAATTTTTTTTAAACTTTAGGTT
3' ss Score
8.83
Exon sequences
Seq C1 exon
CTGGCAGACACACCAAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
Seq A exon
GTAAGTTATTTCATGTATCCCTATGAGGGAGATATTTGGTAAATATAAGGAATAATAGCATTAAGAATTGTGGGATTGATGTAGAGTTAATACATACCATTTTAATGTCCTCTCTCAGAGTAAACCAGTGATTCTCAAAGGTTGAAGAGGGGAGGAGCAGTTCCCTGGAAATGGTGGATGGAAGGCATATCAATATTTCAGGGGAATTTGGTCAGTTTAGTTGAAAAAGCATAATCAGTAATGACTTGTTCTTATAATTTAATCTGCTGAAAGTAAAAGAGAATCATATTAGCTGGTAGGAATATGCAGAAGATAGGGGGATATATTAAAGAGAAGATAGGTTTTTAAATGATTGAGGTCTTCTATGATTTTAAGTTTAGTTAGTGCCGTCTTTAGGAATAGTAGTAGTATTAGTGATCTAAGTTTTTGATAATTAAGTGACATTGATATATTCTTATATAAATCTTTCCCTTTTTTTTTTAAAGGAGCATTTCTACATCTCTTAAAAATATTTTAAAAAGGCAATAGAAATAAAATGTATATGCTGGTTTCAACCAGCTATTGAATTATAACATTATTGTTTGTAACATGTTGCTTTTTTTGAACTTAGCAACATTTCCTCATTAAAAAATGTTATAAGTGGTTAGATCTTTAGGACAACTTAAAAAAGCCATAAAGTTACCTGAGCAGTTACTGTGCTGGTAAAAATACTTTATAGGACAATGAATTCTGTAATCCCAATTTAGTGTGCTAGAAATACCTTTGTTCCTGCTATGGTAGAAATGGGAGCTCTGGTTTCTCACACTTACATAAAAGTTGAATGGCAATCCAAGCACTTGGTAGTGGTTCTTAGGCCAGGCATCCTCTAGTAGAACTAAGAGGGTATTTTAGAGTAAGGACTCTAAGGACTTTGGGAAAGGATTAGAGAACATATATTTCAGAAACCCAAGCCCACAAGAAATGTCACCTCTGCTCCAGGTTATTTCCAATTCCAGATCTGACATGCTAGACACTCCTTTTATTTACTGGGCCTCTAGGATTGATGTACTTTTTCCAAATGCTCTTACCTATTTCTGGCCAGGGTTTCTCTCCTCACCGATTCACTCTGAAATAGAATTCTTTTTTCCCTAAACCTTTTTTGAGGTGTTTGTAACAGATAAGACTAAAAATGTGGAAAAGCACATTGAGACTAAAAAAGACACCACTCTGTACTCTTCTTTCTTTAAAAAGTTAGATGCTACATTTTAAAAAGAAAAGCAGACATGTGTTCTCCCTTCTAATACTATTCCTCTCTCCTACTCCCCTGTCATATCCTACTGTGGACTGGCTCTGGGGCAGATAAGAATCCAAGAAAGCAAAGGGAAAAAACAAAAGCAAGGGGTGGTATTGGATATACTTTCATGTGTTTTACGACTGAGGGTCTTCCATGTATATGTGTTCAGTTTTAAATTTTTAGTTAATTTTTTTTAAACTTTAG
Seq C2 exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCTGAAGGAACCTCTCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTATATCTGAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001393:ENSBTAT00000001831:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.569
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGACACACCAAAATCTG
R:
TTGATTCAGATATAGGTTTGGATGCC
Band lengths:
238-1715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]