MmuINT0101689 @ mm10
Intron Retention
Gene
ENSMUSG00000029267 | Mtf2
Description
metal response element binding transcription factor 2 [Source:MGI Symbol;Acc:MGI:105050]
Coordinates
chr5:108099119-108100983:+
Coord C1 exon
chr5:108099119-108099186
Coord A exon
chr5:108099187-108100812
Coord C2 exon
chr5:108100813-108100983
Length
1626 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CCTTCCATATGTATTTGCAGGTT
3' ss Score
9.21
Exon sequences
Seq C1 exon
CTGGCAGACACACCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
Seq A exon
GTAAGTGGATTTATTTTACATATCCCTCTAAGGGAGTTAGTAAGAGAAGAATAAGGGCATTAAGAATTGTGGGATTGGTGTAAGGAAGAAGTACATGCCATTTTAATATTTTAATGTTCTGTTCTCTTTTGATCAGAGTAAGGTAGGGATTCAAGATGGCTGGAAAAGAAAAGAGAATGGGTGGGTGGGAGGCATGTCAGTGTCCTGATGGGGACGTAGATTTATTCTACTCTCTTGAATCATATTTACTAGTAATTTACTCTGTAATGGAAAATACTGAAGATAAAGTAAAATCTTGTTAGCTGGTGGGAATATGCAAAAAATGAAGCCTTTTATGGTTTAAGATTAGTTATTATTGTCATACTGAGGAGCAGTAAGTTAGTTACTGAGCAAATATTAATTACTAAGTAATATTGATCTGAGTGGTCTTAGATAATTCACTAATAAAATCTTATATTCTTATATAGACCACTCTCCTCCTTTAAGTCCAGCATGTCTACATTTCTTGAAAATATTTTCAAAATGACAAGGAAATTCTTATAAATGTATGTATACAGACTCTCAGACAGTCTATTCTTGTATTATAAAATTTTTGGTTTTGAGAAGATGCTGTTTTGAACTTGACAGTATTTTCTTACTAGATAATGTTTTAGTTACTTGTAATTAGATCTTTAAATTATTTTGAAAATGTGTAAGGTAATTGAGTAATTGTACTGTTAAAAGTATTGATGCACTAAATTCTTAATTCCACCTTAAAATGTCAGAAATACATGTTACTTATAATGGTAGAAATGAGAAGTATATATTCTTTAGGTACATAAAAATGGAAAAACATTTTGAGCAGCTAACTGATACAGGTTTTTATGGCCAGGAATGTGATAGTAGAGCTAAAGTATACAGAAATGTTTGGTTACAGCAATCCTAAACTTTCCCAGATGCATGAAGTCTATATTAACACTTTTTGGATCTAAATTGATTTCAACTCCAAGGCTGGCCTTCTATATACTCATTTTATTTTCTGGATCTTTAGAGATGGCCTTTTTAAAAGTTGTCTCTGGTCAGATTTTTTTGTACTATAAAGATACCCCAAAATAGAGTCTGTTGGGACTCAATACTGTTTGCTTCTTGAGATTATTTAATTATTAATTTAGAGACAGAGCATTACTGACATCATGCTCAGGCTTATCCACAGCCCTGGGCTCAAAGCCAGAAACAGTGGCTCATACTGTGATGTCAAGTACTTGGGAGGTTAAGGCAGGAGAATCATGAATTCATCACCTTCTTAATGAGACCAGTCTCATGAAAGTAATAACTACAAAAACCTGAATTTAAATAATCCTCCTAGCTTGGTGTCTCATGAATTGGGAATCTATTATCTATGATCTATTATTAGTTACCTATTATCACACCTAATCTAGAAGCCCCATTTGGGAGAAGGGAAATGTGGGAGCTTTTTTCTATTCTTGACCTATCCTTTCCACTCATGATAACCTGTAGCCTTTAGATAAGAATCTGTAGCCAGCTATGGGGGTTGATAAGAATAAAGGATATCAAGGGGAAAATATTCTGTGGTATCTGGTAGTTCTCCATGAGTGTTATGCTAGGGCCTTCCATATGTATTTGCAG
Seq C2 exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCAGAAGGAACATCCCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTACATCTGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029267:ENSMUST00000081567:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGACACACCCAAATCT
R:
TTGAGTCAGATGTAGGTTTGGATGC
Band lengths:
238-1864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types