DreINT0098423 @ danRer10
Intron Retention
Gene
ENSDARG00000005590 | mtf2
Description
metal response element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-060512-94]
Coordinates
chr2:10827454-10827789:-
Coord C1 exon
chr2:10827722-10827789
Coord A exon
chr2:10827625-10827721
Coord C2 exon
chr2:10827454-10827624
Length
97 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GTCGATCTTGTGGCTCCTAGGTT
3' ss Score
6.53
Exon sequences
Seq C1 exon
CTTGCAGAGACTCCGAGAGCAGAACGATATGAATGCATTCTGGAAGCACTTAACAACAACCTCGACAT
Seq A exon
GTGAGTTTTTCTGCTTTATCCATCTTGGGAGATTTTAGCTCGACACAGTAGAGCTTGAATGAATTTATCTTCATCTTGTCGATCTTGTGGCTCCTAG
Seq C2 exon
GTTCATGTCAGGTAAAGAGATCAAGAAGAAGAAACACCTATTTGGCTTACGAATCCGCTTCCCACCAGCCCCTCAGAGCTCCGAGCTCCTGTCTGACCGAGAGCCGGAAAAAGCCTCCCACGAGATCAAAATCAAAGGCAGGAAGGCCACCAAACCCCCTCTTTCATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005590:ENSDART00000122709:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.569
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGACTCCGAGAGCAGAA
R:
CTCTCGGTCAGACAGGAGCTC
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]