GgaINT0037227 @ galGal4
Intron Retention
Gene
ENSGALG00000005911 | MTF2
Description
metal-response element-binding transcription factor 2 [Source:RefSeq peptide;Acc:NP_989839]
Coordinates
chr8:12943843-12944459:-
Coord C1 exon
chr8:12944392-12944459
Coord A exon
chr8:12944014-12944391
Coord C2 exon
chr8:12943843-12944013
Length
378 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
ATGACTTTAAAATCATCTAGGTT
3' ss Score
6.03
Exon sequences
Seq C1 exon
CTGGCAGATACACCAAAATCTGAAAGATATGAGCATGTACTGGAGGCATTAAATGATTACAAGACCAT
Seq A exon
GTAAGTTGTTGGTATTTTTATTCTAAATGCTTGCAGCTTTGTTATTTGTAGTTGTCAGTCTCCTATGCTCATTTTATCTTATAATCACTGTGGCTGTGTTAACATTGATGTTTTGAATACTGTTTCTGTTTCAGAGTATAACACCCCATACCTATTTGAGTGGATCCCAGATCATGAGAAAAATTGTTTTAATTTCCATCCTCTTCCCAGTTCTCATTCTGTATTTCAGATTGAGGATTGTGTTAGCGGGAAAAGGTGAATAAAATAGCATTAGGATGAGTATTTTAATTTGCATAGATTTGTTTTGCATGAATACTTTATTTTAAAAGCTGCTTTCCCTGGATTCAGAATGTTAACAATGACTTTAAAATCATCTAG
Seq C2 exon
GTTTATGTCTGGAAAAGAAATAAAGAAAAAGAAGCATTTGTTTGGCTTGAGAATTCGTGTTCCTCCTGTGCCGCCAAATGCTGCTTTAAAGGCTGAGAAAGAGCCAGAAGGAACTTCTCATGAGTTCAAAATTAAAGGCAGAAAATCATCTAAACCAATCCCTGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911:ENSGALT00000009507:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.569
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAAAATCTGAAAGATATGAGCA
R:
CTCACATCAGGGATTGGTTTAGA
Band lengths:
230-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]