HsaINT0105982 @ hg19
Intron Retention
Gene
ENSG00000143033 | MTF2
Description
metal response element binding transcription factor 2 [Source:HGNC Symbol;Acc:29535]
Coordinates
chr1:93592789-93595005:+
Coord C1 exon
chr1:93592789-93592856
Coord A exon
chr1:93592857-93594834
Coord C2 exon
chr1:93594835-93595005
Length
1978 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TAATTTTTTTAAAAATTTAGGTT
3' ss Score
6.79
Exon sequences
Seq C1 exon
CTGGCAGACACACCAAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT
Seq A exon
GTAAGTTGATTTATTTTATGTATCCCTATGAGGGAGACATTTAGTAAGTATAAGGAATAATGGCATTGTTTAAGAATTGTGGGATTGATGTACAGAAGAAGTCTATACCATTTTAAACTTTATAATGTCCTATTCTATTTTAGTTAGATTAAAGCAGTGATTCTCAAGGATTGGAGGAGGGAGGAGTAATCCTTCTCCTGGGAATGGTGGGTGGGAGACATATCGGTATCTCTGGGAGAATTTAGCCTGTTCCATTGAAAAAGCATATTCAGTAATAACTTCCTTCTATAATGTAATGTACTGAAAGTAAAATAAAATCTTGTTAGCTGGTGGGAATATTCAAAAGATAGAGAATATTGTAGGGAATACGGGTTTTTAAAAAGATTGAGATCTGTGGTTATAATAGTTAACACCATTAGTTACAGAAAATAATATTTCTAGCTGAGTAGTCTAAGATAATTAAGTGATATTATTTGATATATTCTCATACAGATCTACAGGTCTTCCCCCTACCTTATTTTTACTTTTTTTTTAACTCACCACTATACTAACAAGGATTCCCTTCTTTTTAAAACAATGTATCTACATTTCTTAGAAACATTTTTAAATGCAACAAATTTTATAAATGTATGTGTTGACTCCAGTGAAATTTTATATTATAAAATTTTTGTTGGCAATAAGTTGGTGTTTTGAAATTGATAGTATTTCTTCATTAAATAATGTAATTACCAGTGGCTGGATCTTTACACCAGCTCAAAAAGCCATGAGGTACCTGATATGACCTTGAAGTATAATAAAAAGGAAAAAAGACTGTAAAAAAGTCATAAGGTACCTGAGCAGTTATTGTGCTGGTAAAAATGTTTCATGGGACAGTGAATTCTGAATTTCAGTTTAGGGTACCAGAAATATATCTGTTCCTGTTATGGTAGTAATGAGGGATCCCCTTTCTTAAACCTGCAAAAAAGTAGAACATTTTGGTTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAAGCCGAGGCAGGCAGATCACCTGGGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATAGCCAGGCATGTTGGTGCACACCTGTATTCCCAGCTACTTAGGAGGCTGAAGCAGGAGAATCGCTTGAACCCGGGAGGTAGAAGTTGCAGTGAGCCGAATTGAGCCACTGCACTCTAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAATTAAAAAGAGAGGGAGAACATTCTAAACAACTGATGGAGGTTCTTGTGGCCAGGCAAGTTTCAGTAGAGCTGAGGTAGATGGAGTTGCTTGGGAATAAGGACCATAGAGACTAAAAGAAAGGTCTAAGGAGCATATTTTGCAGAGGCCCAAGTCCATAATAAACTGGAATAACCCTTCTTTGCCCCAGGTTATTTCCATTTCCAGATCCGGCACTCTAGATACTCCTTTTATTTTCTGGGCCTCTAGGATTTATCTCCTGCTTTCTTTTTCAATGCTGTCACCTATTATTTCTGACTAAGGTTTTTCTCTTTATAAATCCACTCTGAGATGGAATTCTTTTTTCCCTAAATCCCTTTTGAAATATTTCTAACAGATGACACTAAATATGGGAAAGCATATTGGGACCAAAAATATACCATTCTTTGTTCTTCTTTCTTCCTTTAAAAAGTTAGTTGCCATGTTTAAAAAGAAAAGTGGACATGTGCTCTTCTCCTTTCTGGTCCTATCCCTTCCTCCCCATCATATCCTACTGTAGACTGGCTCTGGGGCAGATAAAAATCAAGGAAAGCAAGGGGAAGTGAATTTTTGTAGTATTGGGTGGGCTTTCAAGTATAAGGGCCTTATATATGAAAGTTAAGTTAGGGTCTACTATGTATATGTGTTCAGTTTTTAAAATTTTAGTTAATTTTTTTAAAAATTTAG
Seq C2 exon
GTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCTGAAGGAACATCTCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTATATCTGATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143033-MTF2:NM_007358:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.569
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGACACACCAAAATCTG
R:
TTGAATCAGATATAGGTTTGGATGCC
Band lengths:
238-2216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)