HsaINT0107659 @ hg19
Intron Retention
Gene
ENSG00000144821 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:31073]
Coordinates
chr3:108102442-108103629:-
Coord C1 exon
chr3:108103534-108103629
Coord A exon
chr3:108102577-108103533
Coord C2 exon
chr3:108102442-108102576
Length
957 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
TTTTTTTTTTATTTTTATAGGAA
3' ss Score
11.12
Exon sequences
Seq C1 exon
GCAGAGGAAGACAAGAAGAATCTGAGCAGGATGCAAACTCAGATGGATAAACTTCAGCTAAAAGTGCAAAATTACAAGCAGCAAGTCGAGGTGGCG
Seq A exon
GTGAGTGCCTGGGGAAGTTTCAGCCTCATGGATTTCCCAGTGTTGTTTTGATTAAGGGAGATCTGTGACCCTGAGCTCAGCAAGCAGCTTGTCAGAGAGGACCTGCTCAGCTTAGAGTCTGCTCATCCTCAGTTTTTTTTCTCAAGTTAGAATTCTCACCCATGGCAAAAATGTGCGTGGCTTTTCCCTCCAGGAAGCCAGAGCTCTCTCCTTTACCTTTGTGGTTGCACCCAAACAGGTACACAACAAGAAATGAGATAGGTAAAAGCAGAGTGTCACGTAGGGAAGGCCAGTTTTGGGCAAGGTAGTCACCCTGGGGCCTCCCTCATCCCAAAACCTTGGGTAAACATAAACATGGTTCACAGTATTTGTTCTTGATGATCCTGGATATGGTTGTGGACAAAACCACCATAAATTGAAATGTACTTGCCATCCCTGGGTCAGTATCTATAACTACAGGGAATGTAATTGATAAGTGTCATATATATTGATTTATCCCTAATATTAACTCTTGAGGGGTTTTGATTATTTCAATGATTTGGCCTAAAACACTACCTGTTCTAGCCCAAGGTCTAATAATTACCTGTTGACCCATATAATTTTAAAGACAAGCCCCCTCTACCCAGGGGTAGAATAGGATGTTAAACTCATGACAAAATAGACAACTGTGGTTATTCTAGCACATTTTCAGTCTGTGAGAGCTTTACTGCATCCAGTTGATGAAAAGTGCCAACTAGGTTCTGAATTTCCAAGGAACAAAAGTTATAAAAAAATGGATCTTATACCTGCTAGAAAGTCTGAATCCTAATATATCATACCAAAATATGATATCCCATTCAATACTCAGAAGTTTAGATTCTTTTCACATTATTCAACTTTCTCATGTCAGAGCAGAAAAAAAAAACACCTGACTATATAGGCATGGAGATTTCTTTTTTTTTTTTTTTATTTTTATAG
Seq C2 exon
GAAACACAAGCCAATCAATACCTTTCCAAGTATAAGAAACAGCAACATGAGTTGAATGAAGTGAAGGAAAGGGCAGAGGTGGCAGAATCTCAAGTCAATAAACTCAAAATTAAAGCAAGAGAGTTTGGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821-MYH15:NM_014981:40
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.311
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGAAGACAAGAAGAATCTGA
R:
CTTTTTCCCAAACTCTCTTGCT
Band lengths:
231-1188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)