BtaINT0097254 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53530575-53531652:-
Coord C1 exon
chr1:53531557-53531652
Coord A exon
chr1:53530722-53531556
Coord C2 exon
chr1:53530575-53530721
Length
835 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TTCATTTTTTATTTTTATAGGAA
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTAGAGGAAGATAAGAAAAATATGAGCAGGATGCAGACTCTGATGGATAATCTTCAGCTAAAAGTACAAAGTTACAAGCAGCAAATCGAGTCAGCA
Seq A exon
GTAAGTACCTGAGGCAGTTGCAGCCTCATGGATTTCCTAGCCATTTACATTTGATTAATGGAGATATGTGGCCCTGAGCTAAAGAGGCAGCTTGTCAGAGGACCAGCTCAGCTTAAAGTCTGCTCATTCTCTCTCTCTCTTTTTTTTTTTTTTTAATGTGCATGCTAGAATTATCACCTATAGTTAAAATCTGTGCAACTTTTCCCTTCAGGGAGCCAAAGCTCTCTCCCTTGACCTTTGCTTACACCCAAACATATGCATTGCGTGATATGAGCCAAATAGGAGCATGGTGTCATGTAGAGATAGAAAATTTTGGTTGGGTAATCATCCTGTGGGGCTTCTCATGTGGCTCAGTGGTAAAGAATCCAGGAGACATCAGTGCAGGAGACGTGGGTTCTAACTCTGAGTGGGGAAGATCCCCTGGAGCAAGAAATGGCAATCCACTCTAGTGTTCTTGCCTGGGAAATCCCGTGGACAGAGGAGCCTTATAACAGTAAAGACAGACACCCTCTACCCTGAATAGGATGTTAAATTGATTACAAAACAAATTATGGTTAATCTATCACATACCAAATCTGTGAAAGCTGGACTATATCCTGTTGGTGGTAAGTGCCAACTATGTTCTCAATTTCCAGGGGAAAAAATGTTATAAAATGGGTCTGGTGCCTGCTAGGAAGTCTGAATCCATATACATCATACAAAAATATGATATTTCATTCAGTACTCAGAAGTTTAGATTCCTTTCTCACATTTTTCAATTTTCTCACTTCAGGGCAGGAAAAAATATGATCTTATAGGCTCAGGGATTTCTTTGTTTCATTTTTTATTTTTATAG
Seq C2 exon
GAAGCAGAAGCAAGTCAATACCGTTCCAAGTATAAGAAGCAGCAACATGAGTTGAATGAAGCTAAGGAAAGAGCAGAGATAGCCGAATCTCAAGTTAATAAACTCAAGATGAAAGCAAAAGAGTTTGGGAAAAAGGTGCGTCAGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=NA C2=0.673
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100),PF0003816=Filament=FE(11.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=81.6),PF0003816=Filament=PD(17.5=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATAAGAAAAATATGAGCAGGA
R:
TACCTGACGCACCTTTTTCCC
Band lengths:
238-1073
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development