RnoINT0096456 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54206379-54207765:-
Coord C1 exon
chr11:54207670-54207765
Coord A exon
chr11:54206514-54207669
Coord C2 exon
chr11:54206379-54206513
Length
1156 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
3' ss Seq
CTGTGGTTTTCGTTTGACAGGAG
3' ss Score
8.33
Exon sequences
Seq C1 exon
GCAGAAGAAGACAAGAAAAATCTGAGCAGGATGCAGGCTCTGTCTGACAAACTTCAGCTGAAAGTGCAGAGTTACAAACAGCAGGTGGAAGCAGTC
Seq A exon
GTAAGTGCCGGTTCAGCATCGTGGAGTTCCCAGCCACTGCTTTTGGTTAATGCTCTGAGCTTGGGAAACTGCTCAGCAGAGACAACCATCTGAACACCAGCCACATCTGTCCATTCTCCGCTTTTATATAAATTAGCACTATAGCTTACAGGAGGGAGAAACAAGAAAATTGTGCTGCTTTCCCTGCAGGAAGCCGGACCTCTCTCCCTTGACCTGGTGGCTAGACTCAAACATATACATTAGCAGAAATGAGCCAAGGATAAAATCAGGGTGCCATGCAGGATTGGCAAATTTTTGTAGGGTTTCTTTGTGGGTCTCCTTCAGCTTTAGATTTTGCGTGAACACAATCAAAATTTGTAATACACTTTTTTTCAGATGAACCCAGCAACAATGTGAGCAAACCCACTATCATTTAAATGTCCTTTTTCTTACTCCTTAGCTAATTGGCCTCAGATCAAATTTTCTATAACAAATACATTAAAGCTTAAGTGACATATGTATTAATTTATGCCTGATATTTTAGGAAATTTTGAATTGTATAGTTGGCTATTATGCCCAAGAATAACTTATCAATGCATAACTTGAAAGGACAACCACCTGTTCCTGAGGGTAGCTTAGGATGTGAATCTGATTTTAAGCCAATAATTATGACTGCTTCTAGTATGCAAGTGTGTGAAAGTCATACAGTTGGTGAATATTCACCCATTCTGAATTTCCAGGGGACAACAGCTGTAAAAGGGATCTCTGTTCTTTCTCTTAAAACAAAAGTTCCTGATTTCATTCTTCTTTATATGCACGTGCACTTTGCGTTACATGTAGATTTGTATAAAATCTTTATATGATTTTCTCGTGCCTAGATTGGCCAGAAGAGGGCATCAGATGCTCTGAAACCGTAGTTAACAGGTGCTTGTGAGCTGTATTCAACAGGAAAGCCTGCTGGGTCTTCTGGAAGAGCAGCTATAGCTCTTAACTGTTGAGTCGTCTCTCCAGCCTCCGTTCCTCCTCTTAAGCCTAACTTGTATGTCTTAGACCCAAGTGACACATTTGATTCAGGCTGGGTTTGTATCCTCTTCTGGTTTCCAGTCTATTGTTTCAGAGCAGAGACCGCCATTTAGGAGCGGCTGTACCTTCACATTCTGTGGTTTTCGTTTGACAG
Seq C2 exon
GAGGCACAGGCTAATCAATACCTTTCTAAGTATAAGAAGCAGCAGCACGAGTTGAACGAAGCCAAGGAGAGAGCAGAGGCCGCAGAATCGCAAGTCAATAAACTCAGAGCTAGAGCGAAGGAGCTTGAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=NA C2=0.778
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAAGACAAGAAAAATCTGA
R:
TTTCTCTCAAGCTCCTTCGCT
Band lengths:
230-1386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]