GgaINT0119209 @ galGal4
Intron Retention
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86881304-86882040:-
Coord C1 exon
chr1:86881945-86882040
Coord A exon
chr1:86881442-86881944
Coord C2 exon
chr1:86881304-86881441
Length
503 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
CTGCTGTTTTCTCTCACTAGGAA
3' ss Score
12.02
Exon sequences
Seq C1 exon
TCAGAAGAAGATAAGAAAAATCTGGCCCGAATGCAGGATCTGATAGATAAGCTACAACTAAAAGTGAAGAGCTACAAACACCAAGCAGAGGAAGCC
Seq A exon
GTAAGTGACTATTTAGGCTTTTTTTTCCTAGTTGTGTTAGCCAGTTACTATTTGTGTTTATATGAAGGCTGGACTTATAAATGTATTTATATGTAAAATATATAGCATTTGCACTGATTACTTTAAAAGAAATTATTCCATTTTATCCCAGGATTGGAGAGTAATTTGCAGGATGCAAAGGGAAGGGAGAAACGGGAAAGACTTTTTTTCCTGGTACTCCCTCAGGAGGTATGTTGAGAGCCTTCCAGTTCACTTAAAATGAAGAGTGCAGCTGGAAACATCAAATCCTTTCTTTGTGGAGAAAAAAACCCCTAACGACAACAACAACAACAAAATCCAAAACCAAAAAACCAAAAAAACCACCAACTCTCGGCCCTTCAAGAGTCAAGTGGGTCCCCTAGGGCTGTTACTTAGCCAGGCTGAGCTCTTTTGTTACACTTGAAATGGAAAGCTTTGTTTCTTAGGGACTGGAGGAAATCAGCTCTGCTGTTTTCTCTCACTAG
Seq C2 exon
GAAGCACAAGCCAATCTGTACCTTTCGAAGTACAGAAAACAGCAACATGATCTGGACGATGCTGAAGAAAGGGCAGAAATAGCTGAATCTCAAGTTAACAAGCTGAGGAGCAAGTCAAGGGATATTGGCATGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=NA C2=0.575
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.7=100),PF0003816=Filament=FE(14.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGATAAGAAAAATCTGGCCCGA
R:
CTTTTTCATGCCAATATCCCTTGACT
Band lengths:
230-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]