GgaINT0119209 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90777791-90778527:-
Coord C1 exon
chr1:90778432-90778527
Coord A exon
chr1:90777929-90778431
Coord C2 exon
chr1:90777791-90777928
Length
503 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
CTGCTGTTTTCTCTCACTAGGAA
3' ss Score
12.02
Exon sequences
Seq C1 exon
TCAGAAGAAGATAAGAAAAATCTGGCCCGAATGCAGGATCTGATAGATAAGCTACAACTAAAAGTGAAGAGCTACAAACACCAAGCAGAGGAAGCC
Seq A exon
GTAAGTGACTATTTAGGCTTTTTTTTCCTAGTTGTGTTAGCCAGTTACTATTTGTGTTTATATGAAGGCTGGACTTATAAATGTATTTATATGTAAAATATATAGCATTTGCACTGATTACTTTAAAAGAAATTATTCCATTTTATCCCAGGATTGGAGAGTAATTTGCAGGATGCAAAGGGAAGGGAGAAACGGGAAAGACTTTTTTTCCTGGTACTCCCTCAGGAGGTATGTTGAGAGCCTTCCAGTTCACTTAAAATGAAGAGTGCAGCTGGAAACATCAAATCCTTTCTTTGTGGAGAAAAAAACCCCTAACGACAACAACAACAACAAAATCCAAAACCAAAAAACCAAAAAAACCACCAACTCTCGGCCCTTCAAGAGTCAAGTGGGTCCCCTAGGGCTGTTACTTAGCCAGGCTGAGCTCTTTTGTTACACTTGAAATGGAAAGCTTTGTTTCTTAGGGACTGGAGGAAATCAGCTCTGCTGTTTTCTCTCACTAG
Seq C2 exon
GAAGCACAAGCCAATCTGTACCTTTCGAAGTACAGAAAACAGCAACATGATCTGGACGATGCTGAAGAAAGGGCAGAAATAGCTGAATCTCAAGTTAACAAGCTGAGGAGCAAGTCAAGGGATATTGGCATGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.497 A=NA C2=0.939
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(16.0=88.9),PF0026115=Tropomyosin=PU(13.3=88.9)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(80.0=87.0),PF0026115=Tropomyosin=FE(75.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGATAAGAAAAATCTGGCCCGA
R:
CTTTTTCATGCCAATATCCCTTGACT
Band lengths:
230-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]