DreINT0099904 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24945496-24945828:-
Coord C1 exon
chr11:24945733-24945828
Coord A exon
chr11:24945643-24945732
Coord C2 exon
chr11:24945496-24945642
Length
90 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TGCTGATTGTATAATTGTAGGAG
3' ss Score
5.1
Exon sequences
Seq C1 exon
ACTGAAGAGGACAGAAAGAACATTGCTCGCCTCCAGGAGCTCATAGACAAGCTACAAGCCAAAGTTAAAACCTACAAGAGACAAGCTGAAGATGCT
Seq A exon
GTGAGTCTATCAGCAAAGCTTTGCATGCAACCTCATCATGCATACTTAAAACGGCATCACTGAAGGTTCCTGCTGATTGTATAATTGTAG
Seq C2 exon
GAGGAACAAGCTAATTCCAACTTGACCAAGTACAAGAAGATCCAGCATGAGCTGGACGACGCTGAGGAACGAGCAGATATCGCAGAGTCTCAAGTGAATAAACTACGGACCCGCTCCAGAGACTCTGGCAGTAAGACTACTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=NA C2=0.980
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100),PF0003816=Filament=FE(11.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=81.6),PF0003816=Filament=PD(12.5=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACATTGCTCGCCTCCAG
R:
TCTGCGATATCTGCTCGTTCC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]