GgaINT0010734 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2584979-2585291:-
Coord C1 exon
chr20:2585196-2585291
Coord A exon
chr20:2585117-2585195
Coord C2 exon
chr20:2584979-2585116
Length
79 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
TGCCTTGTGCCTCCCCACAGGAG
3' ss Score
12.12
Exon sequences
Seq C1 exon
ACTGAGGAAGACCGGAAGAACCTGACCCGGATGCAAGATCTGATTGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGCCAGTTTGAGGAGGCG
Seq A exon
GTAAGTGCACGTCCCCTCCACTGCTCTTCTCTGGGGGTACTCAGGTCAGTCCCTCACCCTGCCTTGTGCCTCCCCACAG
Seq C2 exon
GAGCAGCAGGCCAACTCCAACCTGGTGAAGTACCGCAAGGTGCAGCACGAGCTGGACGACGCTGAGGAACGAGCTGACATTGCTGAGACGCAGGTCAACAAGCTGCGTGCCCGCACCAAGGAGGTCATCACCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=NA C2=0.508
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.8=100),PF0003816=Filament=FE(12.2=100),PF052669=DUF724=FE(30.7=100),PF150351=Rootletin=PU(39.7=84.4),PF127182=Tropomyosin_1=PU(39.1=84.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(7.1=87.0),PF0003816=Filament=PD(16.5=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGACCGGAAGAACCTGA
R:
CAGCAATGTCAGCTCGTTCCT
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]