MmuINT0103638 @ mm10
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155633353-155634000:+
Coord C1 exon
chr2:155633353-155633448
Coord A exon
chr2:155633449-155633862
Coord C2 exon
chr2:155633863-155634000
Length
414 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
GGCTCTGCATATGGCTCCAGGAG
3' ss Score
4.48
Exon sequences
Seq C1 exon
ACTGAAGAGGACAGGAAGAACCTGGCTCGCATGCAGGACCTGGTGGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGTCAGTTTGAGGAGGCG
Seq A exon
GTGAGCACACTGGGGGCCAGGTATCTGGGACTGTTCGGGACACTAGTGGCGAGCTGCTTTCAGCTGCGGAACTGGCAGCCAGGGACGCATCTGCAGCAGGCTCAACTAACGGGTAGCAGCCCCACCCTCTCAACTCATGGACTTCTATGGCTACAGCAGGGGTCACTTACAACTATAGAATGGACTTAAAAAGTGAGTGGTTTCTATCCTCAGCCCAGGCACGGTGGGCAGGTGACAGAGGCACTTCTTGAAGGATGGTCTCCACTTTTTTCCCTCCTGTGTGGGTTCTAGTAAGGGGAGGCTGGTGACAGGAAGAGTGGAGGGAGGACCAGGAGAAGTCACTTCTTTCTGGGGATGGGAGCAGGTGGCCATTTTAGTTACCAACGGGAAACAAGGCTCTGCATATGGCTCCAG
Seq C2 exon
GAGCAGCAGGCCAGTACCAACCTGGCTAAGTACCGCAAGGCCCAGCACGAGCTGGATGATGCCGAGGAACGGGCAGACATGGCAGAGACCCAGGCCAACAAGCTGCGGGCAAGGTCCAGGGATGCCCTGGGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652:ENSMUST00000092995:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAGAGGACAGGAAGAACC
R:
GGCATCCCTGGACCTTGC
Band lengths:
222-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types