GgaINT0010734 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2943074-2943386:-
Coord C1 exon
chr20:2943291-2943386
Coord A exon
chr20:2943212-2943290
Coord C2 exon
chr20:2943074-2943211
Length
79 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
TGCCTTGTGCCTCCCCACAGGAG
3' ss Score
12.12
Exon sequences
Seq C1 exon
ACTGAGGAAGACCGGAAGAACCTGACCCGGATGCAAGATCTGATTGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGCCAGTTTGAGGAGGCG
Seq A exon
GTAAGTGCACGTCCCCTCCACTGCTCTTCTCTGGGGGTACTCAGGTCAGTCCCTCACCCTGCCTTGTGCCTCCCCACAG
Seq C2 exon
GAGCAGCAGGCCAACTCCAACCTGGTGAAGTACCGCAAGGTGCAGCACGAGCTGGACGACGCTGAGGAACGAGCTGACATTGCTGAGACGCAGGTCAACAAGCTGCGTGCCCGCACCAAGGAGGTCATCACCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=NA C2=0.478
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100),PF0003816=Filament=FE(11.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=87.0),PF0003816=Filament=PD(16.5=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGACCGGAAGAACCTGA
R:
CAGCAATGTCAGCTCGTTCCT
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]