HsaINT0107912 @ hg38

Intron Retention

Gene

ENSG00000078814 | MYH7B

Description

myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]

Coordinates

chr20:35001431-35002085:+

Coord C1 exon

chr20:35001431-35001526

Coord A exon

chr20:35001527-35001947

Coord C2 exon

chr20:35001948-35002085

Length

421 bp

Sequences

Splice sites

5' ss Seq

GCGGTGAGT

5' ss Score

10.49

3' ss Seq

GGCCCTGTGTGTGCCCCCAGGAG

3' ss Score

9.97

Exon sequences

Seq C1 exon

GCCGAGGAGGACAGGAAGAACCTGGCTCGCATGCAGGACCTGGTGGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGCCAGTTTGAGGAGGCG

Seq A exon

GTGAGTGCGCTGGGGCCTGGACACCTGGACCGGGCACCCCAGCTCTGCCCCAGGGTCTGTGGCCAGGTGAGGCATCAGCAGCAGCTCCACCCTCCAAGGTCAGTGACCCAGAGGGAAGAGAGAAGCTTCTAACATCTCTGGGGAGATCAGACCTAGCTCCTTCTCATGGAACAGACCCCATGTGCTTTCCCCTGGCCAAGGCTGGGGCTGCCTCTGAGGGGTGGGGCAGGCACAAAAAGGCACATGAAGTTGGTGCGTCCCAACTTCCTTATTCCCGCTGTGGTATTGGTGAGGATGGACAGTGGCAATAGGAACAAAGTTGAGAACCAGGAGGAGCTAGCTCCCTTCTTGGACTGGGGCAGGGACCAGAATAAGCATCTCAGTCACCCAAGCGGAACCAAGGCCCTGTGTGTGCCCCCAG

Seq C2 exon

GAGCAGCAGGCCAACACCAACCTGGCCAAGTATCGCAAGGCCCAGCACGAGCTGGATGATGCGGAGGAGCGGGCAGACATGGCGGAAACCCAGGCCAACAAGCTGCGGGCACGGACCCGGGACGCCCTGGGCCCCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000078814:ENST00000262873:41

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.732 A=NA C2=0.957

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=FE(28.7=100),PF096025=PhaP_Bmeg=FE(25.4=100),PF117273=ISG65-75=FE(27.4=100),PF150701=GOLGA2L5=FE(27.9=100),PF150351=Rootletin=FE(39.7=100)

A:

NA

C2:

PF0157614=Myosin_tail_1=PD(37.0=48.2),PF101464=zf-C4H2=PD(51.8=88.0),PF117273=ISG65-75=PD(43.0=59.0),PF150701=GOLGA2L5=PD(45.9=60.2),PF150351=Rootletin=PD(54.4=51.8)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000262873