BtaINT0097383 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64911832-64912535:+
Coord C1 exon
chr13:64911832-64911927
Coord A exon
chr13:64911928-64912397
Coord C2 exon
chr13:64912398-64912535
Length
470 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
AGGCCTGCCTGTGCCCACAGGAG
3' ss Score
8.09
Exon sequences
Seq C1 exon
GCTGAGGAGGACAGGAAGAATCTGGCTCGCATGCAGGACCTGGTGGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAACGTCAGTTTGAAGAGGCG
Seq A exon
GTGAGTGCACGGGAGTCTGGGTCTTTGGGGCCTAGTACCAGTCAGGATTCCGGTGGTCACCCCACTTCTACAGCTGGCCCCAGTCAGTGGGGATGCCAGCAATGGTCAGGCCTGTTCCATCTCTGGGCTGTGATTTCCCCCACGGTGGCTTTGTGTGTTGGTTGGGACAGTGACCCCACTGCCCAGTGGGAAGAAAGACAAGTTTCTAACAGGTCCAGCAAGACACAAGACCTAGCTCTGTCTCTGAGGGGACCTCTCTGATTTCCCCTTCCAGGCAGGTCTGGCACCCAGGCACCTCTGGAATGAGTGGCTCCAAGCCCTTCCTTCCTGCCGTGGGGACTGGGGAGGGATGGGGAGGGCCGTGGGCAGCGGTGGTGAAGCAGACTGGAGGACCAGGAGAAGCCGACCCCTTCTGGGGCAGCTGACCATCTCAGTGATCAGAGAGTGAGCAGGCCTGCCTGTGCCCACAG
Seq C2 exon
GAGCAGCAGGCCAACACCAACCTAGCCAAGTATCGAAAGGCCCAGCATGAGCTGGATGATGCAGAGGAGCGGGCAGACATGGCGGAAACCCAGGCCAACAAGCTGCGGGCACGCACCCGGGACGCCCTGGGCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(4.7=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGGAGGACAGGAAGAAT
R:
GTGCCCGCAGCTTGTTGG
Band lengths:
208-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development