HsaINT0107700 @ hg38
Intron Retention
Gene
ENSG00000125414 | MYH2
Description
myosin heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:7572]
Coordinates
chr17:10527748-10529079:-
Coord C1 exon
chr17:10528690-10529079
Coord A exon
chr17:10527875-10528689
Coord C2 exon
chr17:10527748-10527874
Length
815 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
TTTTACTTTTTCTTCTATAGGGA
3' ss Score
11.85
Exon sequences
Seq C1 exon
GCCCGCATTGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCCGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAGCTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCGGTGGGGCCACTTCAGCCCAGATTGAGATGAACAAGAAGCGGGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACCCTACAGCATGAAGCCACAGCGGCCACCCTGAGGAAGAAGCATGCAGATAGTGTGGCCGAGCTTGGGGAGCAGATTGACAACCTGCAGCGAGTGAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGATGAAGATGGAGATTGATGACCTTGCTAGTAATGTAGAAACGGTCTCCAAAGCCAAG
Seq A exon
GTACTACAAATTCTGGGAAATTGTTATTGAAAATAATGCATTATGGACACATCATAGTTTGCACAGGGCACTTTTTACACATTAAGTCATTTGTTAACTGCAGTAATTCAGGGAAGTAAGCACAAAAAATCAGCATTTTTTATTATTTCAACTTAACAAATAAAGGATCAGAAATTCAAAGAGGCCAAGCACTTTGACCCATCACGCCATTAATAAACGACAACACCAGCTTTTGAACATAAGCCATCTGTGTTCTCCAAGTCTCCAGTTATAGAACAAAGGTCTCCAATTATTTCAAGGAAATTGAAATAAGGAAAGTTTCATCGTACATAAAGGCAATGAAGTATTTTAGAACATGCTTTTAGAAAATGTACACTATACAATTCTAACAAAATCTTAAAATTAGAATATAACCTTAACATTTTCATATTAATATTGAACAGAGCTCCATGATTAGCTTTCATAAAATATAAGAAAAGTCAACCAAGTGTGGTGGCGCGCGCCTGCAGTCCCAGCTATTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGTCGAGATCACGCCACTGCACTCCAGCCTGGGGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAGAAAGAAAGAAAAATTTTTCTGCATTACATTACATATAAGATAATTTGGTTTCTTTTCTATATTAAGATAAATATTGTATTTTTTATTTTGGGGAGAAGTTACAGTAACTGCAAAGGTGATTATTATTCGCTTAAAAGGTCTCTGTTTTCTTCTTTTACTTTTTCTTCTATAG
Seq C2 exon
GGAAACCTAGAGAAAATGTGCCGGACTCTAGAGGACCAACTGAGTGAACTGAAATCAAAGGAAGAGGAGCAGCAGCGGCTGATCAATGACCTGACTGCGCAGAGGGGGCGCCTGCAGACTGAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414:ENST00000245503:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=NA C2=0.837
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACAAGAAGCGGGAGGC
R:
TGCGCAGTCAGGTCATTGATC
Band lengths:
342-1157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development