RnoINT0096282 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53729851-53730893:+
Coord C1 exon
chr10:53729851-53730168
Coord A exon
chr10:53730169-53730697
Coord C2 exon
chr10:53730698-53730893
Length
529 bp
Sequences
Splice sites
5' ss Seq
CATGTTGGA
5' ss Score
-10.38
3' ss Seq
GAGAATTAGCTGCGGCAAAGGCT
3' ss Score
-7.28
Exon sequences
Seq C1 exon
GCTCGCATTGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGCGGCTGGAAGAAGCCGGCGGGGCCACTTCAGCCCAGATCGAGATGAACAAGAAGAGAGAGGCCGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACCCTGCAGCACGAAGCCACAGCAGCCACCCTGAGGAAGAAGCACGCGGACAGCGTGGCTGAGCTCGGGGAGCAGATTAATGTAGAGACAGTGTCTAAGGCCAAGGTACAT
Seq A exon
GTTGGAAAAATGGATATTAATGGCACAAATCCATATGGATACATCAGCTTGCACAGAGCACTTTCTAGGCATTAAATCATTTGTCATTTGTAGGAATACAAAAAGGTGACCAGAGACATGATAGTTTTTTTTTTTGTTTGTTTTTTTTTTTTTTAGTATTTCCATTTTATGTATGAAGTCATGGGATTCAAAGAAGCCAAACACAGGAGTCCATCACTGTTACTAAGTGACTTAAGCACAGGTCACGTGTGTTCTCCAAGTTAGGGTCTCTTATATTTTTTATTGTATGGCAATGCACAATATATGTGAAATATTTTTAATAACTTCATAGAGAACGGAACATATAATTCTTACAGAATCATAAAATCAGAGTCTAATCTTCAAATTTTTATATTACTATTGCACCCAGCTTTATAATTTCCCTTCAGTGAAAGGAAAGACATCGTCTAGATTATATTAAATATAGGACAATTTGATTTATTTGTTTAAAGAAATGTTTTCCTCTGCAGGAGAATTAGCTGCGGCAAAG
Seq C2 exon
GCTATTCATTCTCTCCAGGCTTTGTCAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGGAAACCTAGAGAAGATGTGCCGCACCCTGGAGGACCAGGTGAGTGAGCTGAAGTCGAAGGAGGAGGAACAACAGCGCCTGATCAACGACCTGACCACCCAGAGAGGACGCCTGCAGACCGAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=NA C2=0.485
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(12.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTGGAGGAGATCAGCGA
R:
ACTTCAGCTCACTCACCTGGT
Band lengths:
356-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]