MmuINT0103431 @ mm9
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67002821-67003935:+
Coord C1 exon
chr11:67002821-67003210
Coord A exon
chr11:67003211-67003808
Coord C2 exon
chr11:67003809-67003935
Length
598 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
TCTCTCTCTCTCTCTCTTAGGGA
3' ss Score
12.92
Exon sequences
Seq C1 exon
GCCCGCATCGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCGGCGGAGCCACTTCAGCCCAGATCGAGATGAACAAGAAGAGAGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACGCTGCAGCATGAAGCCACAGCAGCCACCCTGAGGAAGAAGCATGCGGACAGCGTGGCCGAGCTCGGGGAGCAGATCGACAACCTGCAGCGGGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGATGAAGATGGAGATCGATGATCTTGCCAGTAATGTAGAGACAGTGTCTAAGGCCAAG
Seq A exon
GTACATGTTTGGAAAATGGATATTAATGACACTAATCCATATGGATGCCTCAGTTTGCACAGGGCACTTTCTAGATAGTAAGTCATTTGCAGGAGTACAGAAAGGTGACCAGAGAAATGATAATGTTTTTTATTATTTCTATTTTACATACGAAGATATGGGATTCAAAGAAGCCAAGCACAGGAATCCATCACTCTGTTGTTGATAAGTGACATAGCACAGTCACCTGTGCTCTCCAAATTAGGGTCGCTCATATTTTGTATTGTATGACAATGTTCTAGTATATGGAAAAGGAGTGAAGCATTTTTTTAATAACTTCGTAGAGAACAGATCATATAGTTCTTACAGAATTATAAAATTCAGGGTCCAATCTTCAAATTTTCATATGACTATAGCATCTAGCTTCATAATTTCTCTTCAGTAAAAGGAAAGACATCATCTAGATTATATTAAATTTAGGATAATTTGATTTATTTGTTCAAAGAAGTATGTTTTCCTTTGCAGGAAAACTAGCTGCAGCAAAAAGCTATCCATTCTCTCAAAGCTTTGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTAG
Seq C2 exon
GGAAACCTCGAGAAGATGTGCCGCACCCTGGAGGACCAGGTGAGTGAGCTGAAGTCAAAGGAGGAGGAACAGCAGCGACTGATCAACGACCTGACAACCCAGAGAGGACGACTGCAGACCGAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-Myh2:NM_001039545:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.908 A=NA C2=0.977
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(45.1=100),PF0157614=Myosin_tail_1=FE(50.0=100),PF045827=Reo_sigmaC=PU(29.8=32.3)
A:
NA
C2:
PF135141=AAA_27=FE(5.7=100),PF0003816=Filament=FE(14.8=100),PF0157614=Myosin_tail_1=FE(8.2=100),PF0003816=Filament=PU(25.5=55.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGAGATCAGCGAGAG
R:
ACTTCAGCTCACTCACCTGGT
Band lengths:
356-954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: