MmuINT0103431 @ mm10
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67189319-67190433:+
Coord C1 exon
chr11:67189319-67189708
Coord A exon
chr11:67189709-67190306
Coord C2 exon
chr11:67190307-67190433
Length
598 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
TCTCTCTCTCTCTCTCTTAGGGA
3' ss Score
12.92
Exon sequences
Seq C1 exon
GCCCGCATCGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCGGCGGAGCCACTTCAGCCCAGATCGAGATGAACAAGAAGAGAGAGGCTGAGTTCCAGAAAATGCGCAGGGACCTGGAGGAGGCCACGCTGCAGCATGAAGCCACAGCAGCCACCCTGAGGAAGAAGCATGCGGACAGCGTGGCCGAGCTCGGGGAGCAGATCGACAACCTGCAGCGGGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGATGAAGATGGAGATCGATGATCTTGCCAGTAATGTAGAGACAGTGTCTAAGGCCAAG
Seq A exon
GTACATGTTTGGAAAATGGATATTAATGACACTAATCCATATGGATGCCTCAGTTTGCACAGGGCACTTTCTAGATAGTAAGTCATTTGCAGGAGTACAGAAAGGTGACCAGAGAAATGATAATGTTTTTTATTATTTCTATTTTACATACGAAGATATGGGATTCAAAGAAGCCAAGCACAGGAATCCATCACTCTGTTGTTGATAAGTGACATAGCACAGTCACCTGTGCTCTCCAAATTAGGGTCGCTCATATTTTGTATTGTATGACAATGTTCTAGTATATGGAAAAGGAGTGAAGCATTTTTTTAATAACTTCGTAGAGAACAGATCATATAGTTCTTACAGAATTATAAAATTCAGGGTCCAATCTTCAAATTTTCATATGACTATAGCATCTAGCTTCATAATTTCTCTTCAGTAAAAGGAAAGACATCATCTAGATTATATTAAATTTAGGATAATTTGATTTATTTGTTCAAAGAAGTATGTTTTCCTTTGCAGGAAAACTAGCTGCAGCAAAAAGCTATCCATTCTCTCAAAGCTTTGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTAG
Seq C2 exon
GGAAACCTCGAGAAGATGTGCCGCACCCTGGAGGACCAGGTGAGTGAGCTGAAGTCAAAGGAGGAGGAACAGCAGCGACTGATCAACGACCTGACAACCCAGAGAGGACGACTGCAGACCGAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196:ENSMUST00000018641:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.977
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(45.3=100),PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0003816=Filament=FE(14.7=100),PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGAGATCAGCGAGAG
R:
ACTTCAGCTCACTCACCTGGT
Band lengths:
356-954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types