HsaINT0107849 @ hg19
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin, heavy chain 7, cardiac muscle, beta [Source:HGNC Symbol;Acc:7577]
Coordinates
chr14:23893978-23894627:-
Coord C1 exon
chr14:23894491-23894627
Coord A exon
chr14:23894234-23894490
Coord C2 exon
chr14:23893978-23894233
Length
257 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
CTTTCAATGGGCCCCTGCAGAGA
3' ss Score
6.05
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCCGGGCTGCTGGGGCTGCTGGAGGAAATGAGGGACGAGAGGCTGAGCCGCATCATCACGCGTATCCAGGCCCAGTCCCGAGGTGTGCTCGCCAGAATGGAGTACAAAAAGCTGCTGGAACGTAG
Seq A exon
GTGAGAGATCTCAAGAGGAGGTTTCCCGCTTCTCTGAGGCCCAGGCTGGTTCAGGGGCAGTGTCAGGAAAAAAAGCTCAGCAGATCTTCAAACACAGAGACCTGCAGGAGGGGCTCATATGAACACACTGCAGTCACAGGGTCAGAGGCCTCAGGAAGGGTGGGAGGGATGAAGGAAATGGGATATTCCCAAGGTTTCAGGACCTCAGGTAGGAAGGAGGCAGGAGGCTCAGCACTCCTTTCAATGGGCCCCTGCAG
Seq C2 exon
AGACTCCCTGCTGGTAATCCAGTGGAACATTCGGGCCTTCATGGGGGTCAAGAATTGGCCCTGGATGAAGCTCTACTTCAAGATCAAGCCGCTGCTGAAGAGTGCAGAAAGAGAGAAGGAGATGGCCTCCATGAAGGAGGAGTTCACACGCCTCAAAGAGGCGCTAGAGAAGTCCGAGGCTCGCCGCAAGGAGCTGGAGGAGAAGATGGTGTCCCTGCTGCAGGAGAAGAATGACCTGCAGCTCCAAGTGCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054-MYH7:NM_000257:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=45.7)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(27.7=61.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGGGACGAGAGGCTGAG
R:
CCATCTTCTCCTCCAGCTCCT
Band lengths:
308-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)